Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0164
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    32   0.47 
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    32   0.47 
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669...    30   1.9  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    29   4.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   5.8  
11_06_0119 + 20321687-20323624                                         28   7.7  

>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 432 PPNSVSAFCVFVKKXIQQVTKF*WNQL*VNFTVY 331
           PP+ V+A  +F+ K I Q TK  WN    ++T Y
Sbjct: 412 PPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY 445


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 432 PPNSVSAFCVFVKKXIQQVTKF*WNQL*VNFTVY 331
           PP+ V+A  +F+ K I Q TK  WN    ++T Y
Sbjct: 414 PPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY 447


>12_01_1112 -
           11866376-11866447,11866528-11866662,11866772-11866921,
           11867263-11867338,11867426-11867559,11867655-11867747,
           11868456-11868589,11868696-11868744,11869271-11869441,
           11870291-11870452
          Length = 391

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 432 PPNSVSAFCVFVKKXIQQVTKF*WNQL*VNFTVY 331
           PP+ V+A  +F+ K I Q  K  WN    ++T Y
Sbjct: 300 PPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQY 333


>08_01_0519 -
           4518256-4519623,4520840-4521230,4521313-4521525,
           4521632-4521723,4522226-4522342,4522641-4522704,
           4523175-4523228,4523579-4523666,4523788-4524023,
           4525258-4525478,4525634-4525827,4525938-4525995,
           4526771-4526824,4526851-4527473,4527580-4527640,
           4528417-4528590,4528803-4529063,4529201-4529320,
           4529388-4530022,4530062-4530828,4530915-4531012,
           4531101-4531155,4531230-4531318
          Length = 2010

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 19  RRAQHLSKWNILNENK*FTRQHFQFTNLRIMRW*STENIQKKLTVSVAXGSFCIW 183
           ++A   S  NI  E K   + H++F  L  M W + E +Q++L  S A    C W
Sbjct: 552 KKAGERSLCNISLEKK--PKSHWEFV-LEEMAWMANEFMQERLWKSAAASQMCHW 603


>05_07_0332 -
           29332520-29332818,29333511-29333725,29334380-29334408,
           29334956-29335045,29335120-29335155,29335222-29336553,
           29337331-29337497,29337519-29337724,29337815-29338036,
           29338332-29338381,29338754-29338870,29339471-29339551,
           29339656-29339694,29340464-29340636,29340769-29340826,
           29340934-29340987,29341066-29341613,29341695-29341755,
           29342180-29342260,29342448-29342630,29342908-29343162,
           29343304-29343423,29343497-29344901,29344988-29345085,
           29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 19  RRAQHLSKWNILNENK*FTRQHFQFTNLRIMRW*STENIQKKLTVSVAXGSFCIW 183
           +RA   S +N+  E +  TR H+ F  L  M W + + +Q++L  ++A    C W
Sbjct: 610 KRAGERSLYNMSLEKR--TRGHWDFV-LEEMAWMANDFMQERLWKNMAAARVCHW 661


>11_06_0119 + 20321687-20323624
          Length = 645

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 317 HIRKL*TVKLTYN*FHQNLVTCWIXFLTNTQNAD 418
           ++ +L  + L+YN F+Q L +CW   LT+    D
Sbjct: 237 NLTRLEKLDLSYNNFNQPLASCWFWNLTSLTYLD 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,002
Number of Sequences: 37544
Number of extensions: 243882
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)