Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0164
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    28   5.2  

>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 3   FFFCFAARATSVKMEYFERK*IIYKTTFSIYEFKNYAMVKY 125
           FF+ + A     KM YF+ K I Y    SI+ F  + +  Y
Sbjct: 107 FFYRYIAVCKPEKMYYFDEKHICYTFVLSIFIFVAWTITTY 147


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +2

Query: 191 KFSTRXFRILCX---GYGHECV*NGC 259
           K S R F +LC    G+GH C+  GC
Sbjct: 13  KMSPRAFELLCVVMLGFGHLCIMTGC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,636
Number of Sequences: 27780
Number of extensions: 254470
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)