Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0163
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 80 2e-16
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 29 0.80
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.2
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.4
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 7.4
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 9.8
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 9.8
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.8
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 9.8
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 80.2 bits (189), Expect = 2e-16
Identities = 32/73 (43%), Positives = 52/73 (71%)
Frame = +2
Query: 290 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 469
L +++C++VDE D + TK+ECH + LLHRAFS+F+F+++ + LQ+R+ +K+
Sbjct: 17 LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76
Query: 470 TYPDYYTNACCSH 508
T+P +TN CCSH
Sbjct: 77 TFPSLWTNTCCSH 89
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 305 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 397
C++VDE DN I +A R PDGDV H
Sbjct: 34 CIIVDENDNVIMSAGNRV-----PDGDVTQH 59
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 393 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPS 259
SS+S S + S +VP+ S SS+ S S +S+ ++SRPS
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 224 GFRTCETCY-SNKDGLELAQAEALDKDICLL 313
GFRTC C+ N L++ E+ K C +
Sbjct: 56 GFRTCHVCHRKNNMRLKVGTCESCKKHTCAI 86
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 415 PLQQER*YVPSEEIKPKSNISRLLHKCLLQPSL--XIDEKPEEIIRQPDV 558
P+Q + Y PS ++P N+ QPSL + EE++RQ D+
Sbjct: 422 PVQSTQYYQPSSPVQPVQNVKPAQP---AQPSLEDAAKRRVEEMLRQMDI 468
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 209 REKIFGFRTCETCYSNKDGLELAQAEALDK--DICLLVDEKDNF 334
+E++F RTC +DGLE + D+ LV+ NF
Sbjct: 263 KERVFCSRTCRITTIQRDGLESVKQLGTQNVLDLIKLVEWNHNF 306
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 238 TGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFT 140
T EA +L S+L H+D + L+N+ +FT
Sbjct: 78 TSMEALDLSSSLTTPHADKLLKLSNLIAAKSFT 110
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 241 FTGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFTE 137
F+ S S +R+LH++ L + C+N TE
Sbjct: 219 FSYSHHMGYISEIRILHNEYEKLLKFVRECLNSTE 253
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 348 VAVPMKLS-FSSTSRQISLSKASAWANSRPSLLE*QVSQVLKPKIFSRLLGCSTVI 184
+ PM+ S SST +Q+ + +A++ P+L+E V ++ S + G T++
Sbjct: 171 IKYPMESSDSSSTEQQLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIV 226
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 246 QVSQVLKPK-IFSRLLGCSTVILLAF*PTFSYV-*ILLNYTFTLQYNINNNVSR 91
Q +Q + PK IF +LL VIL AF FS+ +N ++ Q N V R
Sbjct: 254 QQAQDMPPKSIFYQLLPLIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPR 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,379
Number of Sequences: 5004
Number of extensions: 57552
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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