Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0163
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 89 3e-18
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 88 7e-18
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 31 0.62
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.3
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 29 4.4
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 28 5.8
05_04_0073 + 17669311-17671635 28 7.7
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 439
G++ Q + D C+LVDE+DN +G +K CH + + + LLHRAFSVFLFN + ++
Sbjct: 12 GMDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYEL 71
Query: 440 FLQRRSSQKVTYPDYYTNACCSH 508
LQ+RS+ KVT+P +TN CCSH
Sbjct: 72 LLQQRSATKVTFPLVWTNTCCSH 94
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 87.8 bits (208), Expect = 7e-18
Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 439
G++ Q + +D C+LVDE+DN IG +K CH + + +LHRAFSVFLFN + ++
Sbjct: 68 GMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYEL 127
Query: 440 FLQRRSSQKVTYPDYYTNACCSH 508
LQ+RS+ KVT+P +TN CCSH
Sbjct: 128 LLQQRSATKVTFPLVWTNTCCSH 150
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 353 RECHKVGPDGDVLLHRAFSVFLFNKR-GDMFLQRRSSQKVTYPDYYTNACCSH 508
R +V DGD HRA V+++++ G++ LQRR+ K T+P + + H
Sbjct: 47 RIASEVHRDGDY--HRAVHVWIYSESTGELLLQRRADCKDTWPGQWDISSAGH 97
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 227 FRTCETCYSNKDGLELAQAEALDKDICLLVDEKDNF--IGTATKRECHKVGPDGDVLLHR 400
F S+ G A +D D LL ++ + +G C +G + D+L
Sbjct: 841 FEYISIALSSHTGKGGASDGLVDADRSLLTQREEQYARVGGVAVEFCVHIGRN-DILFDT 899
Query: 401 AFSVFLFNKRGDMFLQ 448
FS F+ K G MFL+
Sbjct: 900 VFSKFVAAKSGGMFLE 915
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 203 KSREKIFGFRTCETCYSNKDGLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDG 382
K ++ GF CE CY+ K L + D + +D F + H+ GP G
Sbjct: 255 KDCTELIGFDLCEECYNTKSKLPGRFNQHHTPDHRMELDHSALFNRLMRLQGIHEEGP-G 313
Query: 383 DVLLHRAF 406
++++ AF
Sbjct: 314 EIIIEGAF 321
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -1
Query: 408 LNALWSSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSL 256
L++L S S SG L HSL ++ P LS + ++ A++ A SRP++
Sbjct: 116 LSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNSLLAASAAASRPAV 166
>05_04_0073 + 17669311-17671635
Length = 774
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 71 LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 220
LL+ R R T LF+ +C V + + V A T+ HP+ R K+
Sbjct: 706 LLSWRDPRATALFVTFCFVAAIVLYVTPFRVVVFLAGLYTLRHPRFRHKM 755
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,335
Number of Sequences: 37544
Number of extensions: 355419
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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