Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0163
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   33   0.28 
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 29   2.6  

>SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
 Frame = +2

Query: 236 CETCYSNKDGLELAQAEALDKDICLLVDEKDNFIGTATKRECH-KVGPDGDVLLHRAFSV 412
           C    +++  L++ Q   L++  C+LVD  DN  G ATKRECH K       LLHRAFSV
Sbjct: 29  CHRLMAHEGDLDVTQRRLLEEQ-CILVDTDDNVQGCATKRECHLKENIVEQGLLHRAFSV 87

Query: 413 FLFNKRGDMFLQRRSSQKVTYPDYYTNACCSH 508
           FLFN +GD+ +Q+R+  K+T+P  +TN+CCSH
Sbjct: 88  FLFNSKGDLLIQQRADTKITFPGLFTNSCCSH 119


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +3

Query: 195 STLRVEKRFLASEPVKPATLIRMVWN*PRQKL*IKIFAC*LMKR 326
           S ++VE+  LAS PV+ AT   MV N    K  I++ +C LMKR
Sbjct: 170 SEVKVERTCLASLPVRTATTTTMVQNQDEPKT-IELASCDLMKR 212


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 FSKIHTYENVGQKANKITVEHPKSREKIFGF 229
           F +IH     G +  KIT  HPK++ ++ GF
Sbjct: 760 FHRIHRVHREGFRHKKITPRHPKAQGQVEGF 790


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,429,412
Number of Sequences: 59808
Number of extensions: 422966
Number of successful extensions: 949
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)