Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0163
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...    76   3e-14
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...    76   3e-14
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    29   2.2  
U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    28   5.2  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/78 (43%), Positives = 49/78 (62%)
 Frame = +2

Query: 275 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 454
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 455 SSQKVTYPDYYTNACCSH 508
           S++K+T+P+ +TN CCSH
Sbjct: 82  SAEKITFPNLWTNTCCSH 99


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/78 (43%), Positives = 49/78 (62%)
 Frame = +2

Query: 275 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 454
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 455 SSQKVTYPDYYTNACCSH 508
           S++K+T+P+ +TN CCSH
Sbjct: 82  SAEKITFPNLWTNTCCSH 99


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 256 IRVAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM 149
           I + GFTG    NLF  L  LHS+ +  + NI +C+
Sbjct: 15  IFIVGFTG----NLFMVLVTLHSNKLRSICNILICV 46


>U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical
           protein C32D5.14 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 202 RVLHSDL--VSFLTNIFVCMNFTELHFYI 122
           R+  SD+  + F T I +C+NF + HF I
Sbjct: 68  RIRRSDINSIKFQTKILICLNFRKGHFLI 96


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 600 DWYVMNRXLYEPVMMWATQIAT 665
           DW+  +  L EPV+ W  Q AT
Sbjct: 473 DWFEQHSNLLEPVVRWTLQFAT 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,038
Number of Sequences: 27780
Number of extensions: 320037
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)