Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0163
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase...    91   5e-19
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase...    86   2e-17
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    30   1.2  
At5g06850.1 68418.m00774 C2 domain-containing protein contains I...    29   2.8  
At1g51570.1 68414.m05804 C2 domain-containing protein contains I...    28   4.9  

>At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase I (IPP1) identical to SP|Q38929
          Length = 233

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +2

Query: 251 SNKDGLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNK 427
           SN  G++  Q   + +D C+LVDE D  +G  TK  CH +   + + LLHRAFSVFLFN 
Sbjct: 4   SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNS 63

Query: 428 RGDMFLQRRSSQKVTYPDYYTNACCSH 508
           + ++ LQ+RS  KVT+P  +TN CCSH
Sbjct: 64  KYELLLQQRSKTKVTFPLVWTNTCCSH 90


>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase II (IPP2) identical to isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase (IPP2)
           GB:U49259 [Arabidopsis thaliana]
          Length = 284

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = +2

Query: 263 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKV-GPDGDVLLHRAFSVFLFNKRGDM 439
           G++  Q   + +D C+LVDE D  +G  +K  CH +   +   LLHRAFSVFLFN + ++
Sbjct: 59  GMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYEL 118

Query: 440 FLQRRSSQKVTYPDYYTNACCSH 508
            LQ+RS+ KVT+P  +TN CCSH
Sbjct: 119 LLQQRSNTKVTFPLVWTNTCCSH 141


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 65  VKLLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 220
           + LL+ R  R T LF+L+C +      +  ++ V   A    + HP+ R K+
Sbjct: 699 LSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKL 750


>At5g06850.1 68418.m00774 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 669

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 71  LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 220
           LL+ R  R T LF+++C V      +  ++ +        + HPK R K+
Sbjct: 601 LLSWRDPRATCLFVIFCLVAAMILYVTPFKIIALAGGMFWMRHPKFRSKM 650


>At1g51570.1 68414.m05804 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 776

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 71  LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 220
           LL+ R  R T LF+L+C +      I  ++ V        + HP+ R K+
Sbjct: 708 LLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKL 757


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,143
Number of Sequences: 28952
Number of extensions: 293746
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)