Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6GKW8 Cluster: At1g02290; n=2; Arabidopsis thaliana|Re...    35   0.54 
UniRef50_Q6FK62 Cluster: Similar to tr|Q12745 Saccharomyces cere...    33   1.6  
UniRef50_Q75BU7 Cluster: ACR174Cp; n=1; Eremothecium gossypii|Re...    33   2.9  
UniRef50_A6MFP4 Cluster: Ubiquitin ligase; n=9; Euteleostomi|Rep...    32   5.0  
UniRef50_Q6ZT12 Cluster: Zinc finger protein 650; n=36; Euteleos...    32   5.0  

>UniRef50_Q6GKW8 Cluster: At1g02290; n=2; Arabidopsis thaliana|Rep:
           At1g02290 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 443

 Score = 35.1 bits (77), Expect = 0.54
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 271 CLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           C I     + + + +RS QGTEP+ HDPT+ +    R    +IT
Sbjct: 314 CSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSIT 357


>UniRef50_Q6FK62 Cluster: Similar to tr|Q12745 Saccharomyces
           cerevisiae YLR440c; n=1; Candida glabrata|Rep: Similar
           to tr|Q12745 Saccharomyces cerevisiae YLR440c - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 661

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 323 KLLSRDPISEKSSCLIRHFFRFDSRHTNFKDEA 225
           KLL  DP  E +  LI++F++F  R  N  DEA
Sbjct: 389 KLLDEDPTPENNELLIKNFWKFFYRSENIHDEA 421


>UniRef50_Q75BU7 Cluster: ACR174Cp; n=1; Eremothecium gossypii|Rep:
           ACR174Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 381

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 334 PCPESSSHVIPSPKRALAL*DTFSVLILATQISKMK 227
           PC +  S +IP+PK  L L DT S+ IL   +S  K
Sbjct: 102 PCAQCGSVIIPAPKATLPLEDTPSISILDWTVSTRK 137


>UniRef50_A6MFP4 Cluster: Ubiquitin ligase; n=9; Euteleostomi|Rep:
            Ubiquitin ligase - Mus musculus (Mouse)
          Length = 1889

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 226  ASSLKFVWRESKRKKCLIRQE-LFSEMGSRERSFQGTEPLPHDPTNDLEM 372
            A+  K + +E +R+K   RQ+ L +E  SR++SF  T      P ND+ M
Sbjct: 1171 AAEKKTLDKEERRQKARERQQKLLAEFASRQKSFMETAMDVDSPENDIPM 1220


>UniRef50_Q6ZT12 Cluster: Zinc finger protein 650; n=36;
           Euteleostomi|Rep: Zinc finger protein 650 - Homo sapiens
           (Human)
          Length = 741

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 226 ASSLKFVWRESKRKKCLIRQE-LFSEMGSRERSFQGTEPLPHDPTNDLEM 372
           A+  K + +E +R+K   RQ+ L +E  SR++SF  T      P ND+ M
Sbjct: 24  AAEKKTLDKEERRQKARERQQKLLAEFASRQKSFMETAMDVDSPENDIPM 73


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,489,855
Number of Sequences: 1657284
Number of extensions: 5447716
Number of successful extensions: 13304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13303
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)