Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   1.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   1.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   4.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   4.6  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/40 (20%), Positives = 18/40 (45%)
 Frame = +3

Query: 18  VFLIRACYMTMLKIYQCVHSSLRDTSLRKILFDARWSVKQ 137
           +F++    + + + Y C  S     +L  + F  +W+  Q
Sbjct: 238 LFVLSTFSICITQFYYCYDSGFNSDNLTDVYFTLQWAFLQ 277


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 244 VWRESKRKKCLIRQELFSEMGSRERS 321
           VW +++R KC  +Q+  ++  S E+S
Sbjct: 115 VWFKNRRAKCRQQQKQHNQQQSVEKS 140


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 323 KLLSRDPISEKSSCLIRHFFRF 258
           KLL R P+++  S LIR+   F
Sbjct: 312 KLLYRIPVTKTDSMLIRNINLF 333


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 323 KLLSRDPISEKSSCLIRHFFRF 258
           KLL R P+++  S LIR+   F
Sbjct: 137 KLLYRIPVTKTDSMLIRNINLF 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,773
Number of Sequences: 336
Number of extensions: 1280
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)