Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   5.9  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   5.9  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   5.9  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 247 WRESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDP 354
           W +S + K +     +S  G RE + Q  +P+P  P
Sbjct: 48  WNDSNKTKDIAEYYDYSWSGQREANQQIPQPVPVQP 83


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 232 SLKFVWRESKRKKCLIRQELFSEMGSRERSFQGTEPLPHD 351
           S+ +VW+ +   +      LF+  GSR  SF   + L HD
Sbjct: 332 SVDYVWKSTSFDRMQTALRLFATDGSRLSSFLYHKLLGHD 371


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 15  CVFLIRACYMTMLKIYQCVHSSLRDTSLRKILF 113
           C  L  A Y ++   Y C+H+  ++  L   LF
Sbjct: 84  CTPLFLAVYTSLRDAYACIHTHSQEAILLSTLF 116


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  CYMTMLKIYQCVHSSLRDTSLRKIL 110
           C     K+ +C H S RDT+  K+L
Sbjct: 485 CERLTNKLGECEHLSYRDTNANKVL 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,104
Number of Sequences: 5004
Number of extensions: 23766
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)