Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349...    29   1.8  
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097...    29   1.8  
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973...    28   2.4  
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548...    28   2.4  
02_05_0603 - 30295130-30295389,30296840-30296987                       27   5.6  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    27   7.5  
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745...    26   9.9  

>04_04_1157 -
           31333870-31334220,31334440-31334590,31334678-31334909,
           31335001-31335211,31335517-31335635,31335720-31335953,
           31336000-31336201,31336297-31336676,31336792-31336856,
           31337362-31337427,31337883-31337957,31338233-31338304,
           31338994-31339062,31339150-31339221,31339325-31339396,
           31339791-31339862,31339947-31340018,31340474-31340545,
           31340645-31340828,31341474-31341588
          Length = 961

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 241 FVWRESKRKKCLIRQELFSEMG 306
           F+WR+ +RK  L +QEL+S +G
Sbjct: 593 FMWRQKRRKLSLEQQELYSIVG 614


>04_04_1155 -
           31308704-31309051,31309301-31309451,31309532-31309763,
           31309854-31310064,31310304-31310422,31310507-31310581,
           31310789-31310990,31311075-31311454,31311569-31311633,
           31311735-31311779,31312166-31312231,31312667-31312741,
           31313022-31313093,31313659-31313727,31313813-31313884,
           31313995-31314066,31314441-31314512,31314597-31314668,
           31315091-31315162,31315279-31315474,31316094-31316202
          Length = 924

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 241 FVWRESKRKKCLIRQELFSEMG 306
           F+WR+ +RK  L +QEL+S +G
Sbjct: 557 FMWRQKRRKLTLEQQELYSIVG 578


>11_06_0300 +
           22095396-22096145,22096261-22096344,22097062-22097304,
           22098535-22098702,22098895-22099008,22099378-22099890
          Length = 623

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 352 GHGAAAPCPESSSHVIPSPKRALAL 278
           G GAAAP P SSS   P P+ A  L
Sbjct: 49  GGGAAAPPPSSSSSSAPPPRAAPGL 73


>04_04_1159 -
           31352922-31353098,31354117-31354267,31354581-31354812,
           31354902-31355112,31355791-31355909,31355994-31356176,
           31356283-31356481,31356636-31357015,31357127-31357191,
           31357925-31357990,31358427-31358501,31358781-31358852,
           31359318-31359386,31359476-31359547,31359658-31359729,
           31360126-31360230,31360282-31360353,31361053-31361230,
           31361707-31361791
          Length = 860

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 241 FVWRESKRKKCLIRQELFSEMG 306
           F+WR+ +RK  L +QEL+S +G
Sbjct: 550 FLWRKKRRKLSLEQQELYSIVG 571


>02_05_0603 - 30295130-30295389,30296840-30296987
          Length = 135

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 259 KRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGK 390
           K+KK    +E  SE G  E    G+  +P DP ++L   ++ G+
Sbjct: 28  KKKKKKQHREESSEAGHGELHQGGSSEVPADPNDELTEADKMGE 71


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 241 FVWRESKRKKCLIRQELFSEMG 306
           F+WR+ KRK  L  +EL++ +G
Sbjct: 548 FIWRQKKRKILLELEELYNIVG 569


>03_05_0261 -
           22470565-22470714,22472101-22474270,22474368-22474540,
           22474763-22474924,22476420-22476560
          Length = 931

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 246 VARIKTEKVSYKARALFGDGIT 311
           V+R++ EK+ Y+ R   G+G+T
Sbjct: 639 VSRLEREKIDYERRNALGEGLT 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,527,926
Number of Sequences: 37544
Number of extensions: 159615
Number of successful extensions: 411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)