Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81136-2|CAB03459.1|  743|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z70287-10|CAA94299.2|  339|Caenorhabditis elegans Hypothetical p...    26   9.0  
U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm recept...    26   9.0  

>Z81136-2|CAB03459.1|  743|Caenorhabditis elegans Hypothetical
           protein W02B8.3 protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 42  MTMLKIYQCVHSSLRDTSLRKILFDAR 122
           MT  +I++ +HS+++D + +K+ FD R
Sbjct: 534 MTRAEIHRSIHSTIKDVADKKLKFDVR 560


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 235 LKFVWRESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERK 384
           L+F     + K  L +++L  E+ + E  F   +PLP+ PT+  +  ++K
Sbjct: 233 LEFEGDIDELKDLLAKRDLTFEILNYEAGFSSKKPLPYTPTSSGKKNKKK 282


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +1

Query: 244 VWRESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKL 393
           +W E++R++ ++R  +  +    ER  +  E +  DP   +++  RK ++
Sbjct: 1   MWHEARRQEKILRTTMIDQSKRAERKRRYFENVRKDPDQFMQIHGRKAQI 50


>Z70287-10|CAA94299.2|  339|Caenorhabditis elegans Hypothetical
           protein R09E10.4a protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 241 FVWRESKRKKC-LIRQELFSEMGSRERSFQGTEPLPHD 351
           F + + +  KC L  Q +    GSR+ ++ G EPL H+
Sbjct: 37  FFFGKRREPKCDLKNQSIVQADGSRKSAWLGDEPLRHE 74


>U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm receptor
           protein 145 protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 12  ACVFLIRACYMTMLKIYQCVHSSLRDTS 95
           ACV  I  C+MT++     ++  ++DTS
Sbjct: 202 ACVATIGGCFMTIVYCASRIYRKMKDTS 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,078,728
Number of Sequences: 27780
Number of extensions: 132824
Number of successful extensions: 370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)