Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.57 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.57 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 6   TDACVFLIRACYMTMLKIYQCVHSSLRDTSLRKILFDA 119
           TD  ++ IR C  T L       + +   SLRK +  A
Sbjct: 279 TDQILYFIRGCLQTYLINASTYLNEVHTASLRKFILSA 316


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 6   TDACVFLIRACYMTMLKIYQCVHSSLRDTSLRKILFDA 119
           TD  ++ IR C  T L       + +   SLRK +  A
Sbjct: 317 TDQILYFIRGCLQTYLINASTYLNEVHTASLRKFILSA 354


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 251 ENQNGKSVL*GKSSFRRWDHVRGAFRARSRCPMTLPTT 364
           EN+NG  +L       +W  +  AF   +     LP T
Sbjct: 198 ENKNGSVILDTARCSMKWTLIEHAFEISTMLFFVLPMT 235


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGT 333
           E++ K C       + +GSR RSFQ T
Sbjct: 201 ENETKTCKKYAISSNSLGSRSRSFQRT 227


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 292 FSEMGSRERSFQGTEPLPHDPTNDLE 369
           FS++   +RS   T PLP  P N ++
Sbjct: 6   FSKISKVDRS---TSPLPRKPVNPVQ 28


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 166 RNERRQ*NYLCLTLQRASNKIFRRLVSRSEL 74
           +NE    +Y+C + + + N I +R   +  L
Sbjct: 613 QNEEITFDYMCQSSKNSENSIMQRASMKENL 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,098
Number of Sequences: 438
Number of extensions: 1663
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)