Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02290.1 68414.m00171 expressed protein                             35   0.018
At2g01760.1 68415.m00106 two-component responsive regulator fami...    27   4.8  
At5g36170.3 68418.m04360 peptide chain release factor, putative ...    27   6.3  
At5g36170.2 68418.m04359 peptide chain release factor, putative ...    27   6.3  
At5g36170.1 68418.m04358 peptide chain release factor, putative ...    27   6.3  

>At1g02290.1 68414.m00171 expressed protein
          Length = 443

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 271 CLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           C I     + + + +RS QGTEP+ HDPT+ +    R    +IT
Sbjct: 314 CSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSIT 357


>At2g01760.1 68415.m00106 two-component responsive regulator family
           protein / response regulator family protein similar to
           response regulator 9 (GI:14189890) [Zea mays]; similar
           to ARR1 protein (GI:4210449) [Arabidopsis thaliana];
           contains Pfam profile: PF00072 response regulator
           receiver domain
          Length = 382

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 235 LKFVWRESKRKKCLIRQELFSEMGSRERSFQGT 333
           LK +W+   R+KC++++EL S     +    G+
Sbjct: 120 LKNIWQHVVRRKCVMKKELRSSQALEDNKNSGS 152


>At5g36170.3 68418.m04360 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 391

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 LIRQELFSEMGSRERSFQGTEPLP 345
           ++RQ  F+  G R+ SF G E +P
Sbjct: 280 IVRQSPFNSKGLRQTSFSGVEVMP 303


>At5g36170.2 68418.m04359 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 455

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 LIRQELFSEMGSRERSFQGTEPLP 345
           ++RQ  F+  G R+ SF G E +P
Sbjct: 279 IVRQSPFNSKGLRQTSFSGVEVMP 302


>At5g36170.1 68418.m04358 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 456

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 LIRQELFSEMGSRERSFQGTEPLP 345
           ++RQ  F+  G R+ SF G E +P
Sbjct: 280 IVRQSPFNSKGLRQTSFSGVEVMP 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,381
Number of Sequences: 28952
Number of extensions: 126300
Number of successful extensions: 278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)