Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0157
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0212 - 2654691-2656976                                           27   5.7  
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368...    27   10.0 

>04_01_0212 - 2654691-2656976
          Length = 761

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
 Frame = +2

Query: 50  TFFILFYCHDVEG*KAVFVYVTFIF----VIKDAFYLVSSINNS---MFLIEL-QLSLHH 205
           T F+LF+ H  EG     V++T+I     VI D  +L+ ++ ++    FL +  ++ LHH
Sbjct: 275 TAFLLFWFHSKEGQPTADVFITYILLAGTVILDIIWLLKAVASTWTYSFLNDRPRIWLHH 334

Query: 206 S 208
           +
Sbjct: 335 A 335


>02_05_0965 +
           33136373-33136512,33136595-33136688,33136845-33136889,
           33137007-33137174,33137247-33137331,33137531-33137637,
           33137918-33137998,33138232-33138284,33138361-33138460,
           33138911-33139054,33139268-33139364,33139528-33139611,
           33139904-33140123,33140204-33140297,33140406-33140975,
           33141348-33141449,33141564-33141656,33141834-33141836
          Length = 759

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 119 IFVIKDAFYLVSSINNSMFLIELQLSLHHSNN*SFFFIMI 238
           +F+I   F  VSS+ +S F+ E Q + H+  +  +   +I
Sbjct: 557 VFIIMGIFLYVSSLGSSSFVEEEQYTWHYLTSTLYLIFLI 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,189
Number of Sequences: 37544
Number of extensions: 153442
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)