Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0157
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.41 
U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical pr...    29   1.7  

>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 23/92 (25%), Positives = 44/92 (47%)
 Frame = +2

Query: 71  CHDVEG*KAVFVYVTFIFVIKDAFYLVSSINNSMFLIELQLSLHHSNN*SFFFIMIYFLQ 250
           C ++E   A F++ +++F      YL   I+NS+ +         ++  ++FF+ + F  
Sbjct: 10  CQEIEFTHAQFLFRSYLFPF---VYLFGIISNSINICVFSQKSMRNHTVNWFFLALSFSD 66

Query: 251 I*TLNGSAVKLQKCRLYQNSHSP*PNLTLSVE 346
           + TL  S          +NSH+P   + LSV+
Sbjct: 67  LLTLVASIFVFSVPVYAENSHNP-EYIDLSVQ 97


>U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical
           protein F09C12.6 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 38  YRELTFFILFYCHDVEG*KAVFV--YVTFIFVIKDAFYLVSSINNSMFLIELQLSLH 202
           YR+    +L+YC    G KA F   Y TFI++   + YL S + N + +I+   +++
Sbjct: 172 YRKRNVKVLYYC----GRKAAFGNDYATFIYICNISGYLFSFLINCITMIKASSTIN 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,700
Number of Sequences: 27780
Number of extensions: 168498
Number of successful extensions: 259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)