Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0157
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 145 IKRIFNYKDKCHVNKNSLSPLDIMTIK*NKKCQL 44
           I+ IF Y    H N+ ++  LD+  +K  +   L
Sbjct: 658 IENIFKYGYVSHANQRNMYKLDLKNMKYTRSADL 691


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 323 PNLTLSVEKSSFGNSLISPN*YI 391
           P+L  S EK    +++I PN YI
Sbjct: 118 PDLFFSNEKEGHFHNIIMPNVYI 140


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 323 PNLTLSVEKSSFGNSLISPN*YI 391
           P+L  S EK    +++I PN YI
Sbjct: 118 PDLFFSNEKEGHFHNIIMPNVYI 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,793
Number of Sequences: 438
Number of extensions: 2240
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)