Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0156
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 34 0.005
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 29 0.19
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 1.3
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 1.7
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 2.3
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 3.0
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 4.0
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 4.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 4.0
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 5.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 24 5.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 7.0
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 24 7.0
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 34.3 bits (75), Expect = 0.005
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 276 AVSKTAVAPIERVKLLLQ 329
AVSKTA APIERVKLL+Q
Sbjct: 39 AVSKTAAAPIERVKLLIQ 56
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.19
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = +3
Query: 279 VSKTAVAPIERVKLLLQV 332
VS+TAV+P+ER+K++ QV
Sbjct: 33 VSRTAVSPLERMKIIFQV 50
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 92 YEITPNLLFKNQELVFRDPPSACAATPTSTY 184
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 279 VSKTAVAPIERVKLLLQ 329
V+K+ VAP++RVK+L Q
Sbjct: 30 VAKSVVAPLDRVKILYQ 46
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 2.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 231 DPVAFAKDSGWRYLRAVS 284
DP+AF ++ GW +L A S
Sbjct: 919 DPIAFFEEGGWGFLGAPS 936
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 3.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 140 RDPPSACAATPTSTYSPSEDHIIEQNV-EPRRSGRVR*GLWLAVSPRRLQDRRST 301
R PP + +TP T S S + +E N P+++ + W+A +R Q R +T
Sbjct: 416 RSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKNEQ---DAWIA--KKRRQQRYTT 465
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 104 PNLLFKNQELVFRDPPSACAATPT 175
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 4.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 311 TLDGCYGGLGDGAEIPPARVLSERDRIGEVRH 216
T+DG GGLG G IP V+ R + + +
Sbjct: 20 TVDGMLGGLGTG-RIPQTDVVGSRTFLNRLNY 50
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 4.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 72 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 194
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 5.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 122 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 241
N EL PS+ AATPT + S +I + RSG+
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 170 PTSTYSPSEDHIIEQNVEPRRSGRVR*GLWLAVSPRRL 283
P TY+ ++++ ++ RSGRV +SP L
Sbjct: 1078 PDRTYNIDSEYVVYLSLHESRSGRVYMSPLTEISPEHL 1115
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 146 PPSACAATPTSTYSPSED 199
PPSA + P+S+ SPS D
Sbjct: 374 PPSATSFQPSSSRSPSVD 391
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 149 PSACAATPTSTYSPSEDHIIEQNVEPRRSG 238
P A++P YSPS Q P RSG
Sbjct: 126 PDYYASSPYGGYSPSGASSARQTPAPSRSG 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,818
Number of Sequences: 5004
Number of extensions: 28062
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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