Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0156
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.076
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)             32   0.13 
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.13 
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   29   1.2  
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   2.2  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   2.9  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   27   2.9  
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 27   5.0  
SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18)                     26   6.6  

>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 13/19 (68%), Positives = 19/19 (100%)
 Frame = +3

Query: 276 AVSKTAVAPIERVKLLLQV 332
           AVS+T+V+P+ERVK+LLQ+
Sbjct: 46  AVSRTSVSPLERVKILLQI 64


>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
          Length = 76

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 279 VSKTAVAPIERVKLLLQ 329
           +SKTA APIERVKLL+Q
Sbjct: 23  ISKTAAAPIERVKLLVQ 39


>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 279 VSKTAVAPIERVKLLLQ 329
           +SKTA APIERVKLL+Q
Sbjct: 22  ISKTAAAPIERVKLLVQ 38


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 249 KDSGWRYLRAVSKTAVAPIERVKLLLQV 332
           +  G   L  VS+TA AP++R+K+LLQV
Sbjct: 139 RGGGGGALAGVSRTATAPLDRLKVLLQV 166


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 78  CAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDS 257
           CAP    L    C K+RS      H    +  PR   +V+       ++L D  AF +D+
Sbjct: 325 CAPPQDVLQPTECGKLRSQATFSLHVPARRAYPRQQVMVQGMDEQWQADLCDMQAFHRDN 384

Query: 258 -GWRYLRAV 281
            G++YL  V
Sbjct: 385 EGFKYLLTV 393


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 50  ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 193
           ++ ++  Y  C  + E +P +       +    ++D  SAC A P  TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 98   ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 208
            +TPN    LL +  +   R+P SA      S YSPSE  I+
Sbjct: 963  LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 77  LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 199
           LC +D E++P LLF N   +++  R  P    A P++  S  ED
Sbjct: 54  LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 63  HTPTLCAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLVKIT 203
           H    C PV+  L      K  +   ++ H RV   PPR +H++ +T
Sbjct: 256 HVNACCNPVVYSLHNPKLRKCMN--RLVHHKRVRTSPPRAVHVLAMT 300


>SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18)
          Length = 211

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 122 NQELVFRDPPSACAATPTSTYSPSE 196
           N+E   +DPP AC   P S+ SPSE
Sbjct: 67  NREPASQDPP-ACHDPPASSSSPSE 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,664
Number of Sequences: 59808
Number of extensions: 235576
Number of successful extensions: 451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)