Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0155
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   2.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   5.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.6  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    20   8.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   8.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 207 GNSRRTSLWLKCLMLKQIESREA 275
           GN  R  LW +   +++++S+E+
Sbjct: 48  GNGNRCDLWSEKFPIQELKSQES 70


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 309 PSPNSLELCEMLPRERPEA 365
           P  N  E   + PRERP A
Sbjct: 302 PGQNPGEKTNIAPRERPRA 320


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 310 PHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHT 411
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 381 LQEKSVLRVFLVVAFHI 331
           L+EK  +++FL   FHI
Sbjct: 484 LREKPDVKIFLPFRFHI 500



 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -2

Query: 171 HRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 46
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
          protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 91 FRLGETVGSVFLQVLLLLICE 29
          ++L   VGS     L LLIC+
Sbjct: 3  YQLTACVGSAIAGFLFLLICD 23


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 128 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKDV 226
           D  +    LK Y  C+L K +   +  K K  +
Sbjct: 30  DILSNERLLKNYVNCLLDKGRCTPEGKKLKSTI 62


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -2

Query: 171 HRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 46
           H  +  + +  +LK+P  S    C+ A        +C++ F+
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYHFT 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,930
Number of Sequences: 336
Number of extensions: 1922
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)