Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0155
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   5.0  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   6.6  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    24   8.7  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 128 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPN 247
           DF  EN+   + +L + +  ++  KDG + +D+    + N
Sbjct: 84  DFMDENKENGRISLGLSVIVRVTIKDGAYHEDIGYGSIDN 123


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 207 PSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCS 97
           P +V+  DL++  +  + +    VL + +FSLF   S
Sbjct: 525 PCIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFPRSS 561


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 29  LTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 166
           +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 626 ITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 83  RRDSRLCVSSSSPSAHL 33
           R D  +C+SSSS  AHL
Sbjct: 208 RNDKSMCISSSSFIAHL 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,194
Number of Sequences: 5004
Number of extensions: 33741
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)