Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0155
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0371 + 24471014-24471535,24471603-24471884                       27   4.9  
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383...    27   6.4  
03_02_0703 - 10535082-10536779                                         27   8.5  

>05_05_0371 + 24471014-24471535,24471603-24471884
          Length = 267

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 316 GEGCCLCWPGKRQSASLLSICF-SIRHFSQSDV 221
           GE  CL W   + S S++ +CF S+ H S + +
Sbjct: 228 GESPCLDWLSSKPSRSVVYLCFGSLTHVSDTQL 260


>02_05_0622 +
           30437533-30437577,30437694-30438177,30438301-30438354,
           30438565-30438789,30438891-30438943,30439591-30439714,
           30439823-30440077,30440171-30440517,30440661-30441266,
           30441504-30441546,30441624-30441757
          Length = 789

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 306 VAFVGQAS-VNQLLYFQFASALGTLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLK 130
           +A++GQA+ ++Q   F+ A  +G        L +P LVI+     +       G+FS++K
Sbjct: 300 LAYMGQAAYISQHHSFENAYHIGFYVSVPEKLRWPVLVIAILAAVVGSQAVITGTFSIIK 359


>03_02_0703 - 10535082-10536779
          Length = 565

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 122 TGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 238
           +GDFKT NE L K  +       +  K G +K+ V++A+
Sbjct: 252 SGDFKTINEALAKVPVKSTGTYVMYVKAGTYKEYVSVAR 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,173,042
Number of Sequences: 37544
Number of extensions: 213322
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)