Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0155
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical ... 29 1.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 2.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 2.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 2.5
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 3.3
U80843-11|AAB37970.1| 296|Caenorhabditis elegans Hypothetical p... 28 3.3
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 3.3
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 28 3.3
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 3.3
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 3.3
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 27 4.3
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 27 5.7
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 27 5.7
AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical... 27 5.7
AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical... 27 5.7
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 27 5.7
Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical pr... 26 10.0
>AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical
protein C35A11.1 protein.
Length = 429
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = -2
Query: 366 VLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFASALGTLARATSFLNFPSLVISC 187
+L VFL+ F P ++ + + V++ LYF L L+ S +NF V+ C
Sbjct: 293 ILLVFLITEF---PQGIISILCAIFTTDVHRYLYFYIGDVLDLLSLVNSSVNF---VLYC 346
Query: 186 DLISIHRAYFF 154
+ S +R F+
Sbjct: 347 VMSSRYRQTFW 357
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 20 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 199
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 200 KDGKFKKD 223
KD K K++
Sbjct: 7325 KDDKLKQE 7332
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 20 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 199
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 200 KDGKFKKD 223
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 20 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 199
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 200 KDGKFKKD 223
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 285 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 407
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 285 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 407
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U80843-11|AAB37970.1| 296|Caenorhabditis elegans Hypothetical
protein C32B5.15 protein.
Length = 296
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -2
Query: 354 FLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFASA-LGTLARATSFLNFPSLVISCDLI 178
F + F++ LV + S +L F F S+ TLAR + + S++ SC +
Sbjct: 6 FFRMPFNLFTFPLVIRRQIPQEMSFIDVLNFSFCSSKTETLARKSIKKGYSSMIHSCSNL 65
Query: 177 SIHRAY 160
S+ R+Y
Sbjct: 66 SVERSY 71
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 71 DCLSETKADEQLVNKLKTGDFKTENEPLK 157
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 219 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 46
F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 6 FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 71 DCLSETKADEQLVNKLKTGDFKTENEPLK 157
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 285 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 407
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 23 QALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 148
+ LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 336 EKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 VXLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 145
V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 16 VCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 VXLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 145
V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 16 VCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical
protein K12H6.6b protein.
Length = 357
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 240 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNC 100
T R T LN +LV+ +++++ YF SFS+ SP + T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246
>AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical
protein K12H6.6a protein.
Length = 309
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 240 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNC 100
T R T LN +LV+ +++++ YF SFS+ SP + T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 207 PSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVS 82
P ++S L S +N + +VLK+ + L+ +C++ FVS
Sbjct: 14 PFYLLSLCLFSTMYILIYNFTTNVLKAMRYFLYASCTATFVS 55
>Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 29 LTDEQKENLKKHRADCLSETKADEQLVNKLKTGDF----KTENEPLKKYALCMLIKSQLM 196
++DE++E++ +S TKA+ +V L G F ++ KK + + +
Sbjct: 1 MSDEEEEDVNFKPGTEISSTKANYTVVRLLGEGGFGAVYLVQDNKSKKQSAMKVERKIEK 60
Query: 197 TKDGKFKKDVALAKV 241
K K K ++A+ K+
Sbjct: 61 RKHSKLKMEIAILKL 75
>Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 29 LTDEQKENLKKHRADCLSETKADEQLVNKLKTGDF----KTENEPLKKYALCMLIKSQLM 196
++DE++E++ +S TKA+ +V L G F ++ KK + + +
Sbjct: 1 MSDEEEEDVNFKPGTEISSTKANYTVVRLLGEGGFGAVYLVQDNKSKKQSAMKVERKIEK 60
Query: 197 TKDGKFKKDVALAKV 241
K K K ++A+ K+
Sbjct: 61 RKHSKLKMEIAILKL 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,554
Number of Sequences: 27780
Number of extensions: 189631
Number of successful extensions: 620
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -