Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0151
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    30   0.76 
AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine re...    29   1.3  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine re...    28   3.1  
AF099000-1|AAK71876.1|  334|Caenorhabditis elegans Serpentine re...    27   7.0  
AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine re...    27   7.0  

>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 143 VISQIVYLVSLFNYHRYMFAAWS*LINFIMSSV--LPLILXIFVCIL 277
           ++SQ+   +S  NY ++  A WS L  F  SS   LP I+  FV +L
Sbjct: 236 MLSQLRLKISKSNYQKHRNAIWSLLAQFATSSTIFLPPIVCSFVILL 282


>AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein62 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 143 VISQIVYLVSLFNYHRYMFAAWS*LINFIMSS--VLPLILXIFVCIL 277
           ++S +   +S  NY ++  A WS L  F  SS  V+P I  +FV ++
Sbjct: 219 MLSLLKSQISASNYRKHRAAIWSLLAQFATSSVCVVPPIFFVFVVLI 265


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 INFIMSSVLPLILXIFVCILPRILVVF 298
           + F+    LPL++ + +CIL  IL VF
Sbjct: 144 VKFVNRCALPLVIVVILCILSAILGVF 170


>AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein63 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 167 VSLFNYHRYMFAAWS*LINFIMSSVLPLILXIFVCIL 277
           +S  NY ++  A WS L  F  SSVL     +FV ++
Sbjct: 227 ISASNYRKHRAAIWSLLAQFATSSVLFFSPIVFVFVV 263


>AF099000-1|AAK71876.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein60 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 143 VISQIVYLVSLFNYHRYMFAAWS*LINFIMSSV--LPLILXIFVCI 274
           ++S +   +S  NY ++  A WS L  F  S V  +P +  +FV +
Sbjct: 219 MLSLLKTQISASNYQKHRAAVWSLLAQFATSGVCFIPPLALVFVAL 264


>AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine
           receptor, class i protein61 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 143 VISQIVYLVSLFNYHRYMFAAWS*LINFIMS--SVLPLILXIFVCIL 277
           ++S +   +S  NY ++  A WS L  F  S   ++P I  +FV ++
Sbjct: 219 MLSLLKSQISASNYRKHRAAIWSLLAQFATSLVCIIPPICFVFVVLI 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,375,924
Number of Sequences: 27780
Number of extensions: 134125
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)