Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0151
(479 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 3.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 3.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 3.9
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 5.2
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 5.2
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 5.2
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 5.2
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 5.2
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 5.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 5.2
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 5.2
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 5.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 6.9
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 9.1
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 3.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 245 PLILXIFVCILPRILVV 295
P + +F+ ILPR+LV+
Sbjct: 343 PWVKRVFIHILPRLLVM 359
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 3.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 245 PLILXIFVCILPRILVV 295
P + +F+ ILPR+LV+
Sbjct: 343 PWVKRVFIHILPRLLVM 359
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 3.9
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 245 PLILXIFVCILPRILVV 295
P + +F+ +LPR+LV+
Sbjct: 339 PWVRRVFIHVLPRLLVM 355
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 202 SSNSLRNRTHGFQHTSSRYSRERSCSRD 229
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 213 SSNSLRNRTHGFQHTSSRYSRERSCSRD 240
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 213 SSNSLRNRTHGFQHTSSRYSRERSCSRD 240
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 202 SSNSLRNRTHGFQHTSSRYSRERSCSRD 229
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 213 SSNSLRNRTHGFQHTSSRYSRERSCSRD 240
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 202 SSNSLRNRTHGFQHTSSRYSRERSCSRD 229
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 218 SSNSLRNRTHGFQHTSSRYSRERSCSRD 245
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 213 SSNSLRNRTHGFQHTSSRYSRERSCSRD 240
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 5.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 213 SSNSLRNRTHGFQHTSSRYSRERSCSRD 240
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.0 bits (42), Expect = 6.9
Identities = 6/18 (33%), Positives = 13/18 (72%)
Frame = +2
Query: 224 FIMSSVLPLILXIFVCIL 277
+ ++ +LP +L F+C+L
Sbjct: 236 YTVNLILPTVLISFLCVL 253
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 20.6 bits (41), Expect = 9.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 461 SKNCLRNHLFAASHYFSRYEKIQXIETD 378
S N LRN H SRY + + D
Sbjct: 213 SSNSLRNRTHDFQHTSSRYSRERRCSRD 240
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,781
Number of Sequences: 438
Number of extensions: 2024
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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