Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0144
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   118   5e-28
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   118   5e-28
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.3  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  118 bits (285), Expect = 5e-28
 Identities = 51/79 (64%), Positives = 66/79 (83%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
           TSKTGKHGHAK H+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM 
Sbjct: 47  TSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMT 105

Query: 436 DNGDLREDLKXPDGDLGXQ 492
            +G  ++D++ P+G+LG +
Sbjct: 106 TDGTTKDDVRLPEGELGNE 124



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = +3

Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLL 248
           M + E    E G++GAS TFPMQCSALRKNG V++KGR  +++
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIV 43


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  118 bits (285), Expect = 5e-28
 Identities = 51/79 (64%), Positives = 66/79 (83%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
           TSKTGKHGHAK H+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM 
Sbjct: 47  TSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMT 105

Query: 436 DNGDLREDLKXPDGDLGXQ 492
            +G  ++D++ P+G+LG +
Sbjct: 106 TDGTTKDDVRLPEGELGNE 124



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = +3

Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLL 248
           M + E    E G++GAS TFPMQCSALRKNG V++KGR  +++
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIV 43


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 355  NMDVPHVKREDYQLTDIXDDGYL 423
            NM +P+++ E  Q+ D   D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 582 WFALTAMTHSSPQDFSTVHAIPXRC 508
           WF    +  SSP+D S + A+  RC
Sbjct: 681 WFVAPPIEESSPKDKSKIVALCQRC 705


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 417 AIIRDISQLVVFALHVRYVHVVCGGSDIFILFTIEDIYPXQVXFSVSVLSGF 262
           AI R   Q+    +  R + +  G   IF+LFT E +Y   +      LS F
Sbjct: 270 AISRHSGQVHKDRILNRLLALASGQPHIFLLFTFECLYIFSLVIDQETLSSF 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,191
Number of Sequences: 5004
Number of extensions: 39097
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)