Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0144
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 115 3e-26
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 112 2e-25
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 111 5e-25
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 109 2e-24
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 37 0.012
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 1.4
11_06_0437 - 23533218-23536382 29 3.2
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 28 5.5
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315... 28 5.5
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 5.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 7.3
12_01_0034 - 288931-289201,289284-289398,289524-289639,289805-28... 27 9.7
02_05_0664 + 30717551-30719491 27 9.7
02_01_0363 - 2612873-2613814 27 9.7
02_01_0358 - 2575858-2576796 27 9.7
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 115 bits (277), Expect = 3e-26
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DI +DG+++L+
Sbjct: 48 TSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLT 107
Query: 436 DNGDLREDLKXPDGD 480
++G+ ++DL+ P D
Sbjct: 108 ESGNTKDDLRLPTDD 122
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 120 MGDIEDTHCET-GDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
M D E+ H E+ D+GAS T+P Q +RKNG++++K R ++++
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVE 45
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 112 bits (270), Expect = 2e-25
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DI +DG+++L+
Sbjct: 65 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLT 124
Query: 436 DNGDLREDLKXP-DGDLGXQXRTDXAAXRNCV 528
++G+ ++DL+ P D L Q +T ++ V
Sbjct: 125 ESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLV 156
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 MGDIEDTHCET-GDSGASATFPMQCSALRKNGFVMLKGR 233
M D E+ H E+ D+GAS T+P Q +RKNG++++K R
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNR 52
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 111 bits (267), Expect = 5e-25
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R DYQL DI +DG+++L+
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT 1442
Query: 436 DNGDLREDLKXPDGD 480
++G ++DL+ P +
Sbjct: 1443 ESGGTKDDLRLPSDE 1457
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 120 MGDIEDTHCET-GDSGASATFPMQCSALRKNGFVMLKGRHARLLKXH 257
M D E+ H E+ D+GAS T+P Q +RKNG +++K R + H
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNH 1369
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 109 bits (261), Expect = 2e-24
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DI +DG+++L+
Sbjct: 80 TSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLT 139
Query: 436 DNGDLREDLKXPDGD 480
+NG+ ++DL+ P D
Sbjct: 140 ENGNTKDDLRLPTDD 154
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 120 MGDIEDTHCET-GDSGASATFPMQCSALRKNGFVMLKGR 233
M D E+ H E+ D+GAS T+P Q +RKNG++++K R
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNR 39
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 370 HVKREDYQLTDIXDDG-YLTLMADNGDLREDLKXPDGD-LGXQXRTDXAAXRNCV 528
H+ R +YQL DI +DG +++L+ ++G+ ++DL P D L Q +T ++ V
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVV 100
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 76 LIXSFLTGVKFKTQQWXTSKTHTVRPETPGPQPPSPCNV 192
L+ + L + W T T P+ P P PP PC+V
Sbjct: 37 LLNNPLPSASSSSYYWLTWPPPTPLPDAPPPPPPHPCDV 75
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 280 HAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDG 417
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 361 DVPHVKREDYQLTDIXDDGYLTLMADNGDLREDLKXPDGD 480
D P+ RE +++ + D Y+T D+G L ED+K G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>07_01_0412 +
3151059-3151090,3151374-3151833,3151899-3151979,
3152682-3152752,3152827-3152937,3153149-3153231,
3153489-3153705,3154169-3154252,3154423-3154498
Length = 404
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 97 GVKFKTQQWXTSKTHTVRPETPGPQPPSPCNVRPCVKMVSLC 222
G+KF W + K P++ PC VR +++V+ C
Sbjct: 320 GIKFVKSVWPSKKKEKYEPDSTVKGRNEPCLVRQVLEVVAGC 361
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 160 PGPQPPSPCNVRPCVKMVSLC 222
P PQPP PC PC K C
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC 101
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 403 IXDDGYLTLMADNGDLREDLKXP 471
+ DDG + M NGD RE LK P
Sbjct: 92 VKDDGVINSMTRNGDRRELLKGP 114
>12_01_0034 -
288931-289201,289284-289398,289524-289639,289805-289939,
290062-290129,290374-290484
Length = 271
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 403 IXDDGYLTLMADNGDLREDLKXP 471
+ DDG + M NGD RE LK P
Sbjct: 89 VKDDGVINSMTRNGDPRELLKGP 111
>02_05_0664 + 30717551-30719491
Length = 646
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 274 HGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHV 375
HG+ L+ D+ G D+ HNM++ H+
Sbjct: 385 HGYLVRRLLDTDVIQGSALVDMYGKCHNMELAHI 418
>02_01_0363 - 2612873-2613814
Length = 313
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 112 TQQWXTSKTHTVRPETPGPQPPSPC 186
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
>02_01_0358 - 2575858-2576796
Length = 312
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 112 TQQWXTSKTHTVRPETPGPQPPSPC 186
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,510
Number of Sequences: 37544
Number of extensions: 288116
Number of successful extensions: 1080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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