Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0144
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                54   4e-08
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   3.2  
SB_8620| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   5.7  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   7.5  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_56289| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    28   7.5  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           25   8.3  
SB_55605| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +3

Query: 114 TTMGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
           T   ++ DT   +G+SGAS T+P QCS+LRKNG V++KGR  ++++
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVE 630



 Score = 46.4 bits (105), Expect(2) = 4e-08
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +1

Query: 391 QLTDIXDDGYLTLMADNGDLREDLKXPDGDLGXQXRTDXAAXRN 522
           ++T+I +DGYL LM DNGD R D+K  D D+  + R    A  N
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASEN 686



 Score = 28.7 bits (61), Expect(2) = 4e-08
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 256 TSKTGKHGHAK 288
           TSKTGKHGHAK
Sbjct: 633 TSKTGKHGHAK 643


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 KFKTQQWXTSKTHTVRPETPGPQPPSPCNVRPC 201
           K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 127 TSKTHTVRPETPGPQPPSPCNVRPCVKMVSL 219
           T+K HT +P T  P    P N+ P +   +L
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTL 198


>SB_8620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 365 TSMLCVEGQISSYFLPLKISIPTK*XLACPCFPVLDVTFQQSCMTTLQHNETIFT 201
           T +  V   I  Y+ PLK   P    L   C+P+L  T  Q+ ++  Q N  IFT
Sbjct: 52  TGVQAVLDIIDPYYQPLKSCTP----LTNSCYPILLSTHPQTHLSKRQLNVLIFT 102


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = -3

Query: 363  VHVVCG-GSDIFILFTIEDI-YPXQVXFSVSVLSGFGCDXSTILHDDPSA*RNHFYAGPN 190
            +H+V   GS       ++DI +  Q  F+      +G +  T    D    R  F+  PN
Sbjct: 898  IHIVATRGSSYKGDIALDDITFAGQCSFTDETALTYGQNALTTGCSDGG--REGFFNNPN 955

Query: 189  IAW--GRWLRPRSLRSHSV 139
            +A   G+WL P+SLR+  V
Sbjct: 956  LAGCKGQWLGPKSLRASRV 974


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 112 TQQWXTSKTHTVRPETPGPQPPSPCNV 192
           T +   ++T T +PET  P+PP+P  +
Sbjct: 159 TSKPPVTETTTTKPETKPPKPPAPSTI 185


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/81 (20%), Positives = 34/81 (41%)
 Frame = +1

Query: 127 TSKTHTVRPETPGPQPPSPCNVRPCVKMVSLC*RVVMQDC*XVTSKTGKHGHAKXHLVGI 306
           + K  +V P+ P P PP   +  P   +       +++    ++  +  +G+    L+  
Sbjct: 324 SQKKRSVTPKAPSPPPPPSSSSPPSSSLXXXXDDNIIET--KLSGASTGNGNMLKALISQ 381

Query: 307 DIFNGKKYEDI*PSTHNMDVP 369
                 ++ED+    HNMD P
Sbjct: 382 GGITSSEHEDVSGLVHNMDDP 402


>SB_56289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 338 ISSYFLPLKISIPTK*XLACPCFPVLDVTFQQSCMTTLQHNETIFT 201
           I  Y+ PLK   P    L   C+P+L  T  Q+ ++  Q N  IFT
Sbjct: 64  IDPYYQPLKSCTP----LTNSCYPILLSTHPQTHLSKRQLNVLIFT 105


>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1910

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -3

Query: 327  LFTIEDIYPXQVXFSVSVLSGFGCDXSTILHDDPSA*RNHFYAGPNIAWGRWLRP 163
            L T++ +Y   V F V   +    D   ++H D  + R      PN  + + LRP
Sbjct: 1021 LATVDQVYKWSVAFFVEPYTAKARDSEKLVHPDIKSVRVTIVGMPNKVFSQGLRP 1075


>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 492 LXAEVTIRXFEVLTQVTVVSHQGQVA----IIRDISQLVVFALHVRYVHVVC 349
           L   VT   F+V+  VT+  H   V     +   + Q+V + + VRYV V C
Sbjct: 319 LNVTVTCHVFQVVRYVTITCHVFHVLRYVMVTCHVFQVVRYVMIVRYVTVTC 370


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 25.4 bits (53), Expect(2) = 8.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 133 KTHTVRPETPGPQPPSP 183
           K H  +P  P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360



 Score = 20.6 bits (41), Expect(2) = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 157 TPGPQPPSPCNVRP 198
           T GP PP+  N +P
Sbjct: 377 TFGPPPPAASNAKP 390


>SB_55605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -3

Query: 624 CYPYKC*VGLFVESWFALTAMTHSS-PQDFSTVHAIPXRCXVSTXLXAEVTIRXFEVLTQ 448
           CY YKC  G  V+  F L ++ + + P+  + V  +     V+      VTI    ++ +
Sbjct: 11  CYQYKCIRGEVVDECFYLISLIYKAWPR--NEVLWMLGGIAVTQLANVLVTICARPIVKR 68

Query: 447 VTVVSHQGQVAIIRDISQLVVFALHVRYVH 358
            T+  H+   A + D+S L  ++  VR  H
Sbjct: 69  ETIGCHEAMNAAV-DLSSLSNWSADVRLEH 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,013
Number of Sequences: 59808
Number of extensions: 329252
Number of successful extensions: 845
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)