Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0144
(644 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF187730-1|AAG17032.1| 159|Drosophila melanogaster eukaryotic t... 138 4e-33
AY071396-1|AAL49018.1| 159|Drosophila melanogaster RE47768p pro... 137 1e-32
AF159443-1|AAF80375.1| 159|Drosophila melanogaster eukaryotic i... 137 1e-32
AE013599-3794|AAM68297.1| 159|Drosophila melanogaster CG3186-PB... 137 1e-32
AE013599-3793|AAF47151.1| 159|Drosophila melanogaster CG3186-PA... 137 1e-32
AY121665-1|AAM51992.1| 709|Drosophila melanogaster RE10861p pro... 28 9.4
AE014296-2303|AAF49800.1| 709|Drosophila melanogaster CG10710-P... 28 9.4
>AF187730-1|AAG17032.1| 159|Drosophila melanogaster eukaryotic
translation initiationfactor 5a protein.
Length = 159
Score = 138 bits (335), Expect = 4e-33
Identities = 63/83 (75%), Positives = 70/83 (84%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H+VGIDIF+ KKYEDI PSTHNMDVP+VKRED QL I DD +LTLM
Sbjct: 46 TSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMT 105
Query: 436 DNGDLREDLKXPDGDLGXQXRTD 504
D+GDLREDLK P+G+LG Q R D
Sbjct: 106 DSGDLREDLKVPEGELGEQLRLD 128
Score = 62.5 bits (145), Expect = 5e-10
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +3
Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
M +++D H ET DSGAS T+PMQCSALRKNGFVMLK R ++++
Sbjct: 1 MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVE 43
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 521 IACTVLKSCGEECVIAVKAN 580
+ CTVLK+CGEECVIA+K N
Sbjct: 135 LLCTVLKACGEECVIAIKTN 154
>AY071396-1|AAL49018.1| 159|Drosophila melanogaster RE47768p
protein.
Length = 159
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H+VGIDIF+ KKYEDI PSTHNMDVP+VKRED QL I DD +LTLM
Sbjct: 46 TSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMT 105
Query: 436 DNGDLREDLKXPDGDLGXQXRTD 504
++GDLREDLK P+G+LG Q R D
Sbjct: 106 ESGDLREDLKVPEGELGEQLRLD 128
Score = 59.3 bits (137), Expect = 4e-09
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +3
Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
M +++D ET DSGAS T+PMQCSALRKNGFVMLK R ++++
Sbjct: 1 MAELDDQF-ETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVE 43
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 521 IACTVLKSCGEECVIAVKAN 580
+ CTVLK+CGEECVIA+K N
Sbjct: 135 LLCTVLKACGEECVIAIKTN 154
>AF159443-1|AAF80375.1| 159|Drosophila melanogaster eukaryotic
initiation factor 5A protein.
Length = 159
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H+VGIDIF+ KKYEDI PSTHNMDVP+VKRED QL I DD +LTLM
Sbjct: 46 TSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMT 105
Query: 436 DNGDLREDLKXPDGDLGXQXRTD 504
++GDLREDLK P+G+LG Q R D
Sbjct: 106 ESGDLREDLKVPEGELGEQLRLD 128
Score = 62.5 bits (145), Expect = 5e-10
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +3
Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
M +++D H ET DSGAS T+PMQCSALRKNGFVMLK R ++++
Sbjct: 1 MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVE 43
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 521 IACTVLKSCGEECVIAVKAN 580
+ CTVLK+CGEECVIA+K N
Sbjct: 135 LLCTVLKACGEECVIAIKTN 154
>AE013599-3794|AAM68297.1| 159|Drosophila melanogaster CG3186-PB,
isoform B protein.
Length = 159
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H+VGIDIF+ KKYEDI PSTHNMDVP+VKRED QL I DD +LTLM
Sbjct: 46 TSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMT 105
Query: 436 DNGDLREDLKXPDGDLGXQXRTD 504
++GDLREDLK P+G+LG Q R D
Sbjct: 106 ESGDLREDLKVPEGELGEQLRLD 128
Score = 59.3 bits (137), Expect = 4e-09
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +3
Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
M +++D ET DSGAS T+PMQCSALRKNGFVMLK R ++++
Sbjct: 1 MAELDDQF-ETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVE 43
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 521 IACTVLKSCGEECVIAVKAN 580
+ CTVLK+CGEECVIA+K N
Sbjct: 135 LLCTVLKACGEECVIAIKTN 154
>AE013599-3793|AAF47151.1| 159|Drosophila melanogaster CG3186-PA,
isoform A protein.
Length = 159
Score = 137 bits (331), Expect = 1e-32
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
TSKTGKHGHAK H+VGIDIF+ KKYEDI PSTHNMDVP+VKRED QL I DD +LTLM
Sbjct: 46 TSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMT 105
Query: 436 DNGDLREDLKXPDGDLGXQXRTD 504
++GDLREDLK P+G+LG Q R D
Sbjct: 106 ESGDLREDLKVPEGELGEQLRLD 128
Score = 59.3 bits (137), Expect = 4e-09
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +3
Query: 120 MGDIEDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
M +++D ET DSGAS T+PMQCSALRKNGFVMLK R ++++
Sbjct: 1 MAELDDQF-ETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVE 43
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 521 IACTVLKSCGEECVIAVKAN 580
+ CTVLK+CGEECVIA+K N
Sbjct: 135 LLCTVLKACGEECVIAIKTN 154
>AY121665-1|AAM51992.1| 709|Drosophila melanogaster RE10861p
protein.
Length = 709
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 172 AEAPESPVSQCVSSMSPI 119
A AP SP SQC SS SP+
Sbjct: 585 AVAPHSPASQCSSSQSPM 602
>AE014296-2303|AAF49800.1| 709|Drosophila melanogaster CG10710-PA
protein.
Length = 709
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 172 AEAPESPVSQCVSSMSPI 119
A AP SP SQC SS SP+
Sbjct: 585 AVAPHSPASQCSSSQSPM 602
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,480,583
Number of Sequences: 53049
Number of extensions: 475662
Number of successful extensions: 1304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -