Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0144
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   104   6e-23
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   103   8e-23
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   2.8  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    27   8.6  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    27   8.6  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    27   8.6  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    27   8.6  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  104 bits (249), Expect = 6e-23
 Identities = 52/82 (63%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLM- 432
           TSKTGKHGHAK H+V IDIF  KK EDI PSTHNMDVP VKR +Y L  I DDGY +LM 
Sbjct: 49  TSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMD 107

Query: 433 ADNGDLREDLKXPDGDLGXQXR 498
            ++ + ++DLK PD +LG Q R
Sbjct: 108 PESCEQKDDLKLPDTELGQQIR 129



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/40 (62%), Positives = 32/40 (80%)
 Frame = +3

Query: 132 EDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
           +D H  TGDSGA+ATFP QCSALRKN  VM+KGR  ++++
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVE 46


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  103 bits (248), Expect = 8e-23
 Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLM- 432
           TSKTGKHGHAK H+V IDIF  KK EDI PSTHNMDVP VKR +Y L  I +DG+ +LM 
Sbjct: 83  TSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMD 141

Query: 433 ADNGDLREDLKXPDGDLGXQXR 498
            ++ +L++DLK P+GDLG   R
Sbjct: 142 PESCELKDDLKMPEGDLGNTIR 163



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 31/40 (77%)
 Frame = +3

Query: 132 EDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
           ++   ++ +SGA+ATFP QCSALRKN  VM++GR  ++++
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVE 80


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 127 TSKTHTVRPETPGPQPPSPCNVRP 198
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 130 SKTHTVRPETPGPQPPSPCNVRPCV 204
           S + T    TPGP P +PC+  P V
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDV 189


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 130 SKTHTVRPETPGPQPPSPCNVRPCV 204
           S + T    TPGP P +PC+  P V
Sbjct: 29  SASTTTNYSTPGPSPMAPCSAGPDV 53


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 130 SKTHTVRPETPGPQPPSPCNVRPCV 204
           S + T    TPGP P +PC+  P V
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDV 207


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 130 SKTHTVRPETPGPQPPSPCNVRPCV 204
           S + T    TPGP P +PC+  P V
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDV 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,489
Number of Sequences: 27780
Number of extensions: 235881
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)