Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0144
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.83 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.83 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 208 FLRRAEHCMGKVAEAPESPVSQCVSSMSPIVV 113
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 208 FLRRAEHCMGKVAEAPESPVSQCVSSMSPIVV 113
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 127 TSKTHTVRPETPGPQ 171
           T   H   PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 393 LVVFALHVRYVHVVCG 346
           LV FAL +R   +VCG
Sbjct: 707 LVTFALVLRPTDIVCG 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,669
Number of Sequences: 438
Number of extensions: 2986
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)