Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0144
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   115   2e-26
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   111   5e-25
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   110   9e-25
At3g51290.1 68416.m05614 proline-rich family protein                   29   2.6  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    29   3.5  
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    27   8.1  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  115 bits (277), Expect = 2e-26
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
           TSKTGKHGHAK H V IDIF  KK EDI PS+HN DVPHV R DYQL DI +DGY++L+ 
Sbjct: 46  TSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLT 105

Query: 436 DNGDLREDLKXPDGD 480
           DNG  ++DLK P+ D
Sbjct: 106 DNGSTKDDLKLPNDD 120



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 16/40 (40%), Positives = 29/40 (72%)
 Frame = +3

Query: 132 EDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
           E+ H E+ D+GAS T+P Q   +RKNG++++K R  ++++
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVE 43


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  111 bits (266), Expect = 5e-25
 Identities = 48/72 (66%), Positives = 56/72 (77%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
           TSKTGKHGHAK H V IDIF  KK EDI PS+HN DVPHV R DYQL DI +DG+++L+ 
Sbjct: 46  TSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLT 105

Query: 436 DNGDLREDLKXP 471
           DNG  ++DLK P
Sbjct: 106 DNGSTKDDLKLP 117



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = +3

Query: 132 EDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
           ++ H E+ D+GAS T+P Q   +RK G +++KGR  ++++
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVE 43


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  110 bits (264), Expect = 9e-25
 Identities = 48/75 (64%), Positives = 57/75 (76%)
 Frame = +1

Query: 256 TSKTGKHGHAKXHLVGIDIFNGKKYEDI*PSTHNMDVPHVKREDYQLTDIXDDGYLTLMA 435
           TSKTGKHGHAK H V IDIF  KK EDI PS+HN DVPHV R DYQL DI +DG+++L+ 
Sbjct: 46  TSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLT 105

Query: 436 DNGDLREDLKXPDGD 480
           D+G  ++DLK P  D
Sbjct: 106 DSGGTKDDLKLPTDD 120



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 132 EDTHCETGDSGASATFPMQCSALRKNGFVMLKGRHARLLK 251
           ++ H E  +SGAS T+P     +RK G +++K R  ++++
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVE 43


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 109 KTQQWXTSKTHTVRPETPGPQPPSP 183
           +T  W T+ T +V P  P P PP P
Sbjct: 91  ETTTWTTTTTSSVLPPPPPPPPPPP 115


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 133 KTHTVRPETPGPQPP 177
           +T  VRP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 462 EVLTQVTVVSHQGQVAIIRDISQLVVFALHVRYVHVVCGGSDIF 331
           E ++ +T  +H+G V   R +S +V+  LH   +  +   SDIF
Sbjct: 636 EAMSAITPAAHRGSVVQSRPLSPVVLPCLHRHLLESMSLISDIF 679


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,503
Number of Sequences: 28952
Number of extensions: 218873
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)