Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0141
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 78 1e-15
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 29 0.60
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 1.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.4
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 5.6
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.6
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 7.4
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 78.2 bits (184), Expect = 1e-15
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +2
Query: 257 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 436
DAF KF K KV GFDNL AMEIDPN+ + E+ E+ + G+MQ++
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120
Query: 437 PGIDEAMSYAEVMKLVKGMNFSAV 508
PGIDEA+++AE++K +K M F V
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDCV 144
Score = 73.3 bits (172), Expect = 3e-14
Identities = 39/102 (38%), Positives = 57/102 (55%)
Frame = +3
Query: 78 FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIL 257
F+PL +L+N+++Q SL+WIF SCSLA+Q+SKVR SVL+ISTDPAHN+
Sbjct: 3 FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62
Query: 258 MHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNILKEN 383
F K +++ G S + L Q + ++N
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQN 104
Score = 68.9 bits (161), Expect = 6e-13
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = +1
Query: 484 KRHEL*CCMFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGL 648
K E C +FDTAPTGHTLR L+FP V+E+ LGKL L S+ P INQ+ S+ G+
Sbjct: 137 KSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGV 191
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 139 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 255
+LE E GKLRA+ VS F L S+ I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +3
Query: 252 ILMHSTRNFLKYQQRLKGLTTYSLWRLIRML 344
+++ +F++YQ +K T +W+LI++L
Sbjct: 3 VILQYADHFVEYQNDMKRYDTLHVWKLIKLL 33
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 455 MSYAEVMKLVKGMNFSAVCSILHRLDILSDFYHSRKL 565
+ YAE ++KG+ FS + I +R+ F +SR L
Sbjct: 1253 VQYAEAKDVIKGLLFSILTCIYNRITSGQGFSYSRLL 1289
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 502 CCMFDTAPTGHTLR 543
CC+F PTGH+LR
Sbjct: 144 CCLFFIRPTGHSLR 157
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 538 EYVQSVQYRTYSTKVHAFY*FHHLSIAHSLINT 440
++++ + + T+VHAFY + L + S INT
Sbjct: 253 KFIEKLVSKEELTRVHAFYSLNDLKLETSTINT 285
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 505 CMFDTAPTGHTLRLLSFPQV 564
C++D + GH+ L SFP V
Sbjct: 680 CVYDPSNVGHSFALASFPYV 699
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 98 VEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 205
+++ +S +D + RER WEN +Q S+ E
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 478 FHHLSIAHSLINTRKSSNNLLHDTLVQS 395
F +L I H L NT + + ++HD + ++
Sbjct: 95 FENLEILHQLSNTPRDKDAVIHDKIEEN 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,277
Number of Sequences: 5004
Number of extensions: 46197
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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