Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0141
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 79 3e-15
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722... 60 2e-09
09_05_0004 + 20021394-20023430 32 0.47
08_01_0112 - 885965-886010,887084-887145,887908-887976,888076-88... 29 3.3
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 29 3.3
02_03_0082 - 15021751-15022330,15022397-15022626 29 3.3
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 28 5.8
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 28 7.7
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 79.0 bits (186), Expect = 3e-15
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +2
Query: 257 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 436
DAF Q+F+K PT V+GF+NL+AMEIDP V + E E G + E+ A
Sbjct: 68 DAFQQRFTKFPTLVRGFNNLYAMEIDPKVENDDFANEGME----------GFLSELTNAI 117
Query: 437 PGIDEAMSYAEVMKLVKGMNFSAV 508
PG+DEAMS+AE++KLV+ M++S V
Sbjct: 118 PGVDEAMSFAEMLKLVQTMDYSVV 141
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/54 (59%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +1
Query: 508 MFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGLAD-FNSD 666
+FDTAPTGHTLRLL FP +E+GL K+M LK+K +NQ LFGL D N D
Sbjct: 142 VFDTAPTGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQATRLFGLGDELNED 195
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +3
Query: 90 EPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNILMHST 269
+P+++N+++Q+SL+W+F CS L++ L+ R+SVL+ISTDPAHN+
Sbjct: 12 DPTVRNLLEQESLKWVFVGGKGGVGKTTCSSILSILLASARQSVLVISTDPAHNLSDAFQ 71
Query: 270 RNFLKYQQRLKG 305
+ F K+ ++G
Sbjct: 72 QRFTKFPTLVRG 83
>02_05_0729 -
31271566-31271730,31271799-31271933,31272210-31272284,
31273003-31273068,31273154-31273222,31273303-31273377,
31273518-31273628,31273947-31274009,31274064-31274453
Length = 382
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = +1
Query: 508 MFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFG 645
+FDTAPTGHTLRLLS P ++ +GK+++L+SK+A + I S+FG
Sbjct: 230 VFDTAPTGHTLRLLSLPDFLDASIGKILKLRSKIASATSAIKSVFG 275
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 174 CSCSLAVQLSKVRESVLIISTDPAHNI 254
C+ SLAV+ + L++STDPAH++
Sbjct: 85 CAASLAVRFANNGHPTLVVSTDPAHSL 111
>09_05_0004 + 20021394-20023430
Length = 678
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 511 TYSTKVHAFY*FHHLSIAHSLINTRKSSNNLLHDTLVQSHS 389
++ + +HAF H+ +AH L + S +N+ +TL+ HS
Sbjct: 192 SWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHS 232
>08_01_0112 -
885965-886010,887084-887145,887908-887976,888076-888123,
888205-888264,888392-888504,888578-888650,888725-888769,
889382-889527,890782-890842,891913-892056,892164-892400
Length = 367
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 443 IDEAMSYAEVMKLVKGMNFSAVCSILHRLDILSDFYHSRKL 565
ID+ +S A+V KL F ++C ++RL +L D++HS ++
Sbjct: 290 IDKKVSQADV-KLF----FESICGEVYRLRLLGDYHHSTRI 325
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 139 SLEGKAELGKLRAVAVSQFSCRKFANL 219
++E + GK RA+ VS FSC+K +L
Sbjct: 80 AMEKLYDSGKARAIGVSNFSCKKLEDL 106
>02_03_0082 - 15021751-15022330,15022397-15022626
Length = 269
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 362 EEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGM 493
+E E E A +LDK + +PG DE ++ +++KLVK +
Sbjct: 49 KEDCESEKGAHKLDKMLEDHRTSLYPGCDE-KAFGDLLKLVKNI 91
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 356 LPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFS 502
+ +YF G S + + GV E VGA I + +S V K+ G F+
Sbjct: 531 IENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSMKVVSKIEAGERFT 579
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 263 FDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPG 442
F+Q ++PT+++G +L + I N +P + F RL G + G PG
Sbjct: 159 FNQLSGRIPTELQGLRSLININIQTNYLTGLVPNDLFNHTPSLRRLIMG-NNSLSGPIPG 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,454
Number of Sequences: 37544
Number of extensions: 272049
Number of successful extensions: 688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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