Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0141
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 33/53 (62%), Positives = 44/53 (83%)
 Frame = +1

Query: 508 MFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGLADFNSD 666
           +FDTAPTGHTLRLLSFP V+E+ LGK++ LK+ ++PFI+Q  SL G+ D N+D
Sbjct: 41  IFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQFGSLLGMQDLNAD 93



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +2

Query: 392 MRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAV 508
           M + K ++ E++GAFPGIDEAMS+AEVM+LV  M+FS V
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFAEVMRLVNSMDFSTV 40


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 351 VNPTFGSISIANRLSNPLTFVGTLENFWSNASG 253
           + P   S +I N LSN   + G LE +W N++G
Sbjct: 198 MQPYIPSDTILNFLSNRTAYGGVLERYWLNSNG 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,983,897
Number of Sequences: 59808
Number of extensions: 331334
Number of successful extensions: 777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)