Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0141
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...    80   2e-15
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    53   2e-07
U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    29   3.9  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    29   3.9  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 38/75 (50%), Positives = 50/75 (66%)
 Frame = +3

Query: 81  EPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNILM 260
           + LE S+KN+++QK+L+WIF           CSCSLA QLSKVRE VL+ISTDPAHNI  
Sbjct: 3   DQLEASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISD 62

Query: 261 HSTRNFLKYQQRLKG 305
             ++ F K    ++G
Sbjct: 63  AFSQKFTKTPTLVEG 77



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
 Frame = +2

Query: 257 DAFDQKFSKVPTKVKGFDNLFAMEID--PNVGLTELP--EEYF------EGESEAMRLDK 406
           DAF QKF+K PT V+GF NLFAMEID  PN    E+   EE        EG S    + K
Sbjct: 62  DAFSQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGK 121

Query: 407 GVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAV 508
             +Q   G  PGIDEAMS+ E++KL+  ++F  V
Sbjct: 122 DFLQSFAGGLPGIDEAMSFGEMIKLIDSLDFDVV 155



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +1

Query: 508 MFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGL 648
           +FDTAPTGHTLRLL FP ++E+   K++ L+    P +NQ   +FG+
Sbjct: 156 VFDTAPTGHTLRLLQFPTLLEKVFTKILSLQGMFGPMMNQFGGMFGM 202


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +1

Query: 508 MFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGLAD 654
           +FDTA TGHTLRLL FP +V+    K++ L+  + P +N I  +F + D
Sbjct: 14  VFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLEPMLNNIGGMFEMED 62


>U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical
           protein K11C4.1 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 130 GGFSLEGKAELGKLRAVAVSQFS-CRKFAN 216
           G F L G+AELG+LR + V  F  CRKF +
Sbjct: 144 GNFCL-GRAELGELRKIFVLDFGLCRKFVD 172


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 466 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 371
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 630 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 661


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 466 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 371
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 699 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,713
Number of Sequences: 27780
Number of extensions: 252536
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)