Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0141
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 386 EAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVCSILHRLDILSDFYHS 556
           EA+RLD   + +I G F  I   +        ++  +++ +   L  LDI  +F  S
Sbjct: 529 EAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDYAFIPGNLKWLDIHGNFIES 585


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 407 GVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVCSILHRLDIL 538
           G   +++G  P +D+  +  E +K   G      C + ++ DIL
Sbjct: 29  GKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQNDIL 72


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = -2

Query: 309 SNPLTFVGTLENFWSNASGYCGQ 241
           + P+  +  L+N +     +CGQ
Sbjct: 507 ATPMMVINMLQNLYEQFDSFCGQ 529


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 222 LIISTDPAHNILMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD 347
           +I+   P H+   H    F K  QR+K    Y +WR  R+++
Sbjct: 116 VILDFVPNHS--SHEHPWFKKSVQRIKPYDEYYVWRDARIVN 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,466
Number of Sequences: 438
Number of extensions: 3168
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)