Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0140
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    29   0.77 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.8  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   5.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.5  

>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 98  KQFMQCNRTYFSLRYLLSKYDYVFNQLSII 187
           +Q ++ NRT F L Y++ K+   FN LS I
Sbjct: 37  EQLLEKNRTDFKLMYVIVKFYRWFNNLSFI 66


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 393  FSLPYFRTYAXSVLMQISRGTSEIAMNSKFPTNRLILSYKXRQLN 527
            F+LP+      + L  IS+  SEI+ N K    +  LS++ R  N
Sbjct: 915  FNLPFHVKQLYTWLAPISKYDSEISFNQKKERRKTFLSFERRGKN 959


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 273 RTCRLSDKRVFTPSPAQTPXKICTKLV 353
           + C     R+FT  PAQ P   C K++
Sbjct: 37  KMCESCVDRIFTTGPAQCPTPGCNKIL 63


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 277 VLFICVSWSYLNLEIKLVCSS 215
           VLF C+ +  LNL+  L+CS+
Sbjct: 166 VLFGCIKFGNLNLDKALICST 186


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +3

Query: 306 TPSPAQTPXKICTKLVIWDEEWQLWP*PAFSLPYFRTYAXSVLMQISRGTSEIAMNSKFP 485
           TP+P+Q P +  T L  +D+   +   P+FS       A ++L  +S  TS  AM+   P
Sbjct: 147 TPTPSQLPVRPSTSLSFFDD---IPLGPSFS-------AETILSSLSISTSNNAMSKTTP 196

Query: 486 TNRLI 500
              L+
Sbjct: 197 APPLV 201


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 474 NS*LSPMSLGLSASVHXTHTFGSTAG 397
           +S  S +S  L++S+  T TFGST+G
Sbjct: 744 SSTFSRLSSTLTSSIIPTETFGSTSG 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,519
Number of Sequences: 5004
Number of extensions: 45070
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)