Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0140
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    28   7.5  
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607...    28   7.5  
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077...    27   9.9  

>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 365 GMAALALTGLLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNKQAD 499
           G+AA A  G +  V+  VCV  T A +P+ I +  +F +  ++ D
Sbjct: 5   GLAADARCGAIDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKD 49


>02_04_0224 -
           21059328-21059888,21060388-21060462,21060715-21060798,
           21060866-21061183,21061511-21061722,21061766-21062030
          Length = 504

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 358 QITSFVQIFXGVCAGDGVNTRLSERRHV 275
           ++ S  ++F G  AGD V  R+ E  HV
Sbjct: 18  EVQSLAELFGGPGAGDAVEWRMPENHHV 45


>08_02_0866 +
           22006822-22006899,22006997-22007080,22007621-22007719,
           22007864-22007908,22008170-22008265,22009150-22009227,
           22009864-22009949,22010038-22010104,22010192-22010254,
           22010332-22010433,22010559-22010663,22010748-22010840,
           22011380-22011468,22012049-22012268,22012816-22012899,
           22013221-22013337,22013399-22013473,22013589-22013675,
           22013766-22013828,22014833-22014949,22015231-22015323,
           22015794-22015919,22015992-22016092,22016917-22016996,
           22017023-22017093,22017200-22017256,22017430-22017573
          Length = 839

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 175 LIKHVIVLREQISQ*EIRPITLHK 104
           LIKH+++LREQI+  +I     HK
Sbjct: 546 LIKHLLILREQIAPFDIEFSVTHK 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,159
Number of Sequences: 37544
Number of extensions: 280625
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)