Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0140
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X80878-1|CAA56846.1| 1324|Homo sapiens R kappa B protein.              30   6.3  
BC063280-1|AAH63280.1| 1299|Homo sapiens NFRKB protein protein.        30   6.3  

>X80878-1|CAA56846.1| 1324|Homo sapiens R kappa B protein.
          Length = 1324

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 500 YQPVCWEL*IHSYLRCPSAYLHQYTXRI---RSEVRQGEGRSGPELPF 366
           Y+ +C++     YL     Y H+   +I   RS++ +   RSGP LPF
Sbjct: 136 YRQLCFKSQYKRYLNSQQQYFHRLLKQILASRSDLLEMARRSGPALPF 183


>BC063280-1|AAH63280.1| 1299|Homo sapiens NFRKB protein protein.
          Length = 1299

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 500 YQPVCWEL*IHSYLRCPSAYLHQYTXRI---RSEVRQGEGRSGPELPF 366
           Y+ +C++     YL     Y H+   +I   RS++ +   RSGP LPF
Sbjct: 123 YRQLCFKSQYKRYLNSQQQYFHRLLKQILASRSDLLEMARRSGPALPF 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,879,997
Number of Sequences: 237096
Number of extensions: 1528832
Number of successful extensions: 3301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3301
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)