Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0140
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    30   1.6  

>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 581 SIKCDTSGPRYPCKSLHWIQLSXLVG*YQPVCWEL*IHSYLRCPSAYLHQYTXRIRSEVR 402
           +IK +     +PC  + W       G  +PV     +++ LRC  +  HQY    ++E+R
Sbjct: 119 NIKLECKAQGFPCPEIKWFTK----GSKEPVHIGR-VYTILRCKCSNEHQYKCVAKNEIR 173

Query: 401 QG 396
           +G
Sbjct: 174 EG 175


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 581 SIKCDTSGPRYPCKSLHWIQLSXLVG*YQPVCWEL*IHSYLRCPSAYLHQYTXRIRSEVR 402
           +IK +     +PC  + W       G  +PV     +++ LRC  +  HQY    ++E+R
Sbjct: 119 NIKLECKAQGFPCPEIKWFTK----GSKEPVHIGR-VYTILRCKCSNEHQYKCVAKNEIR 173

Query: 401 QG 396
           +G
Sbjct: 174 EG 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,176,736
Number of Sequences: 27780
Number of extensions: 256892
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)