Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0136
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.56 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 433 LPSNKCGSRNKSTTSLAPPLYTGSALNAPRVA 528
           LP+++C SR  S + + P   +G ++ + R A
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGESMLSERAA 110


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 407 DPYGVLPLWRSNDLYLHCRWG 345
           DP G +PL +S + Y  C+ G
Sbjct: 159 DPNGNVPLGKSCNRYWQCQGG 179


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 365  YLHCRWGE 342
            YLHC WG+
Sbjct: 1294 YLHCLWGK 1301


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 288 HRTIRCWRTSPSDVH 244
           HR  RC +T P D++
Sbjct: 99  HRPGRCCKTCPGDLY 113


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  TSSRRWPPXHPAAPSRSLTNFPTVRSS 130
           +S+  +PP HP + S+ L +    R+S
Sbjct: 68  SSTSPYPPNHPLSGSKHLCSICGDRAS 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,486
Number of Sequences: 336
Number of extensions: 3734
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)