Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0136
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 168 5e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 83 4e-17
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 80 3e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 5e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 7e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 51 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 4e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 28 1.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 2.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 3.2
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 26 4.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 5.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 5.6
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.6
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 5.6
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 7.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.5
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.9
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 25 9.9
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 168 bits (409), Expect = 5e-43
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLS
Sbjct: 291 KDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS 350
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWISKQEYDESGP IV+RKCF
Sbjct: 351 TFQQMWISKQEYDESGPGIVYRKCF 375
Score = 145 bits (351), Expect = 6e-36
Identities = 68/81 (83%), Positives = 71/81 (87%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE LCYV LDFEQE+ T A SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 211 DIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLE 270
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHE TYNSIMKCDVDIR+
Sbjct: 271 NAGIHEATYNSIMKCDVDIRK 291
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 83.0 bits (196), Expect = 4e-17
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
++KE LCYV D E + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 211 EMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSE 270
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
G+ E +++I DVDIR+
Sbjct: 271 QPGLSEFIFDTIQAADVDIRK 291
Score = 60.1 bits (139), Expect = 3e-10
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 12/88 (13%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSV 401
K LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V
Sbjct: 291 KYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAV 350
Query: 402 WIGGSILAS-LSTFQQMWISKQEYDESG 482
+IGG++LA ++ MW+SK E++E G
Sbjct: 351 FIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.8 bits (188), Expect = 3e-16
Identities = 36/83 (43%), Positives = 59/83 (71%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 440
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 441 QQMWISKQEYDESGPSIVHRKCF 509
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 77.4 bits (182), Expect = 2e-15
Identities = 34/80 (42%), Positives = 46/80 (57%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
+IKE CYV DF E+ + +Y+LPD Q IT+G E F PE LF P +G E
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSE 275
Query: 196 ACGIHETTYNSIMKCDVDIR 255
A G+H + SI+ D+D+R
Sbjct: 276 ASGLHIQLFKSILLSDIDLR 295
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.8 bits (178), Expect = 5e-15
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 431
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 432 STFQQMWISKQEYDESGP---SIVHRKC 506
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 32.7 bits (71), Expect(2) = 0.002
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 94 EKSYELPDGQVITIGNERFRCPEALFQP 177
E +E PDG + G ER++ PE LF P
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 23.8 bits (49), Expect(2) = 0.002
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 202 GIHETTYNSIMKCDVDIR 255
GI + N I +CDVDIR
Sbjct: 326 GIPQLFQNCISECDVDIR 343
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 7e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 434
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 435 TFQQMWISKQEYDESG 482
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Frame = +1
Query: 79 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSI 231
+SS K +E PDG G ERFR E LF PSF + G+HE Y SI
Sbjct: 273 ASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSI 332
Query: 232 MKCDVDIR 255
+ CD ++R
Sbjct: 333 LACDSELR 340
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERK 392
K LY N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 324 KGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQR 383
Query: 393 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 500
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 384 NAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 32.3 bits (70), Expect = 0.065
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +1
Query: 19 IKEXLCYVFLDFEQEMATXASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 186
IKE CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 187 GME-ACGIHETTYNSIMKCDVDIRR 258
+ + E N + +D+R+
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRK 324
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 440
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 441 QQMWISKQEYDESGPSIVHRK 503
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
Score = 43.2 bits (97), Expect = 3e-05
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 20/92 (21%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASS--SSLEKSYELPD------------------GQVITI 135
+IKE +CYV +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 136 GNERFRCPEALFQPSFLGMEACGIHETTYNSI 231
NERF PE LF PS + + GI E S+
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 440
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 441 QQMWISKQEYDESGPSIV 494
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
Score = 29.1 bits (62), Expect = 0.61
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 142 ERFRCPEALFQPSFLGMEACGIHE 213
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 425
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 426 SLSTFQQMWISKQEYDESGPSIVHRK 503
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 284 RWYHHVPWNRRPYAKGNHSSRPIDNEDKDHCSSREEVLRMDRWIDPRLPLYLPTNVDLET 463
RWY PW + KG+ + +E K+ SSR + + W+D YL + +D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 464 RV 469
V
Sbjct: 534 AV 535
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 402 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 503
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 50 TSSRRWPPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 184
TS R PP + + SL N P RSS E D V + P++
Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 68 PPXHPAA-PSRSLTNFPTVRSSPSET 142
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 44 FLTSSRRWPPXHPAAPSRSLTNFPTVRSSPS 136
FL SS+ PP PA R NF + R S S
Sbjct: 182 FLQSSQHIPPSTPAQKLRKKNNFDSFRISNS 212
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 397 EYFLSGGAMIFIFIVDGARAVISFCIRSAIPGYM--VVPPDNTVLAYKSFGC 248
E+F+ +F+ V V + CI S +P ++ V+ P N + + GC
Sbjct: 55 EFFIFCLIPLFVIYVSSKVGVFTLCIASFLPSFVLHVISPINWDVLRRKPGC 106
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 53 SSRRWPPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 178
SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 350 SSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 397 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSALNAPRVAXSAARGRLLN 558
P + D+ SPP + + ++T +P + + + NAP SA ++N
Sbjct: 455 PSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIIN 508
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +1
Query: 397 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSALNAPRVAXSAAR 543
P SVD S+PPS P S + S P SA AP A S R
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNR 94
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 327 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 437
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 77 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 181
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 383 WRSNDLYLHCRWGESCD 333
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 315 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 494
+R+Q + +A T + +I P + ++LA L T S DES P V
Sbjct: 279 NRIQSLVYPIAYKTNENMLICAPTGAGKTDV--ALLAMLQTISNYVESMNLMDESEPLDV 336
Query: 495 HRKCFK 512
HR FK
Sbjct: 337 HRDDFK 342
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 460 FEIHICWKVEREARIDPPIHTEYFLSGGAMIFI 362
F H C+K+ + I T YF+ G + F+
Sbjct: 364 FFYHPCFKLPSDPTYPSDIETNYFVKGETITFV 396
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 394 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 489
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 400 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 486
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 37 YVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHET 216
++ D Q+ T SSL SYE + + ++ P + F+P++ G G E
Sbjct: 94 FIIKDCHQDWETSDEKSSL--SYEYDFTPIYSKEDQVVSIPFSEFKPTYRGRPVEGAPEL 151
Query: 217 TYNSIMKCDVDIR 255
+ I + + IR
Sbjct: 152 DVSKITQFSIMIR 164
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 461 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 375
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 400 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 486
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,746
Number of Sequences: 5004
Number of extensions: 57800
Number of successful extensions: 233
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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