Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0136
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 168 3e-42
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 168 3e-42
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 168 3e-42
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 168 3e-42
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 163 9e-41
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 163 9e-41
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 163 1e-40
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 163 1e-40
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 151 5e-37
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 144 6e-35
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 141 4e-34
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 127 6e-30
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 94 7e-20
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 81 7e-16
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 77 8e-15
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 69 3e-12
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 53 2e-07
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 50 1e-06
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 43 2e-04
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 40 0.001
At5g43500.2 68418.m05318 expressed protein 34 0.074
At5g43500.1 68418.m05319 expressed protein 34 0.074
At3g14720.1 68416.m01861 mitogen-activated protein kinase, putat... 31 0.69
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote... 31 0.92
At4g00750.1 68417.m00102 dehydration-responsive family protein s... 30 1.2
At2g39440.1 68415.m04841 expressed protein 29 2.8
At1g69270.1 68414.m07941 leucine-rich repeat family protein / pr... 29 2.8
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 29 3.7
At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.7
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 28 6.5
At4g16144.1 68417.m02448 expressed protein 28 6.5
At2g42760.1 68415.m05295 expressed protein 28 6.5
At1g67710.1 68414.m07727 two-component responsive regulator fami... 28 6.5
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 6.5
At4g19110.1 68417.m02819 protein kinase, putative contains prote... 27 8.5
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 27 8.5
At2g11090.1 68415.m01187 expressed protein 27 8.5
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 27 8.5
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 168 bits (408), Expect = 3e-42
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWISK EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWISKSEYDESGPSIVHRKCF 377
Score = 140 bits (340), Expect = 6e-34
Identities = 65/81 (80%), Positives = 71/81 (87%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE L YV LD+EQE+ T SSSS+EK+YELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 213 DIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
A GIHETTYNSIMKCDVDIR+
Sbjct: 273 APGIHETTYNSIMKCDVDIRK 293
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 168 bits (408), Expect = 3e-42
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 141 bits (342), Expect = 3e-34
Identities = 62/81 (76%), Positives = 72/81 (88%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE LCY+ LD+EQE+ T +SSS+EK+YELPDGQVITIG+ERFRCPE L+QPS +GME
Sbjct: 213 DIKEKLCYIALDYEQELETAKTSSSVEKNYELPDGQVITIGSERFRCPEVLYQPSMIGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHETTYNSIMKCDVDIR+
Sbjct: 273 NAGIHETTYNSIMKCDVDIRK 293
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 168 bits (408), Expect = 3e-42
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 142 bits (344), Expect = 2e-34
Identities = 64/81 (79%), Positives = 71/81 (87%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
D+KE L Y+ LD+EQEM T +SSS+EKSYELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 213 DVKEKLAYIALDYEQEMETANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
A GIHETTYNSIMKCDVDIR+
Sbjct: 273 AAGIHETTYNSIMKCDVDIRK 293
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 168 bits (408), Expect = 3e-42
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 141 bits (342), Expect = 3e-34
Identities = 62/81 (76%), Positives = 72/81 (88%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE LCY+ LD+EQE+ T +SSS+EK+YELPDGQVITIG+ERFRCPE L+QPS +GME
Sbjct: 213 DIKEKLCYIALDYEQELETAKTSSSVEKNYELPDGQVITIGSERFRCPEVLYQPSMIGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHETTYNSIMKCDVDIR+
Sbjct: 273 NAGIHETTYNSIMKCDVDIRK 293
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 163 bits (396), Expect = 9e-41
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+ GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWISK EYDE+GP IVHRKCF
Sbjct: 353 TFQQMWISKAEYDEAGPGIVHRKCF 377
Score = 141 bits (341), Expect = 4e-34
Identities = 64/81 (79%), Positives = 72/81 (88%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE L +V +D+EQEM T +SSS+EK+YELPDGQVITIG ERFRCPE LFQPSF+GME
Sbjct: 213 DIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
A GIHETTYNSIMKCDVDIR+
Sbjct: 273 AAGIHETTYNSIMKCDVDIRK 293
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 163 bits (396), Expect = 9e-41
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+ GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWISK EYDE+GP IVHRKCF
Sbjct: 353 TFQQMWISKAEYDEAGPGIVHRKCF 377
Score = 141 bits (341), Expect = 4e-34
Identities = 64/81 (79%), Positives = 72/81 (88%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE L +V +D+EQEM T +SSS+EK+YELPDGQVITIG ERFRCPE LFQPSF+GME
Sbjct: 213 DIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
A GIHETTYNSIMKCDVDIR+
Sbjct: 273 AAGIHETTYNSIMKCDVDIRK 293
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 163 bits (395), Expect = 1e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+ GI DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 136 bits (328), Expect = 2e-32
Identities = 62/81 (76%), Positives = 70/81 (86%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
D+KE L Y+ LDFEQE+ T +SSS+EKS+ELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 213 DMKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHETTYNSIMKCDVDIR+
Sbjct: 273 NPGIHETTYNSIMKCDVDIRK 293
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 163 bits (395), Expect = 1e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+ GI DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
TFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 353 TFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 134 bits (325), Expect = 4e-32
Identities = 61/81 (75%), Positives = 70/81 (86%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
D+KE L Y+ LD+EQE+ T +SSS+EKS+ELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 213 DMKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHETTYNSIMKCDVDIR+
Sbjct: 273 NPGIHETTYNSIMKCDVDIRK 293
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 151 bits (365), Expect = 5e-37
Identities = 67/85 (78%), Positives = 75/85 (88%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+PGIADRM KEI ALAP +MKIK++APPERKYSVW+GGSILASLS
Sbjct: 294 KDLYGNIVLSGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLS 353
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
+F MWI+K EYDE G +IVHRKCF
Sbjct: 354 SFAPMWITKAEYDEQGGAIVHRKCF 378
Score = 133 bits (322), Expect = 9e-32
Identities = 58/81 (71%), Positives = 69/81 (85%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE LCY+ +D+EQEM +SS+++++YELPDGQVITIG ERFRCPE LFQ S +GME
Sbjct: 214 DIKEKLCYIAVDYEQEMEKATTSSAIDRTYELPDGQVITIGAERFRCPEVLFQTSLIGME 273
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHETTYNSIMKCDVDIR+
Sbjct: 274 TSGIHETTYNSIMKCDVDIRK 294
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 144 bits (348), Expect = 6e-35
Identities = 64/85 (75%), Positives = 75/85 (88%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+ GI +RM KEI ALA + M+IKI+APPERKYSVWIGGSILASLS
Sbjct: 245 KDLYGNIVLSGGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLS 304
Query: 435 TFQQMWISKQEYDESGPSIVHRKCF 509
T++QMWI+K EY+E+GP+IVH KCF
Sbjct: 305 TYEQMWITKAEYEENGPAIVHTKCF 329
Score = 126 bits (303), Expect = 2e-29
Identities = 56/81 (69%), Positives = 65/81 (80%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE Y+ LD+EQEM SS+++++YELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 165 DIKEQFGYIALDYEQEMEKATKSSAIDRTYELPDGQVITIGAERFRCPEVLFQPSLIGME 224
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
GIHE TYNSIMKCD DIR+
Sbjct: 225 TSGIHEKTYNSIMKCDDDIRK 245
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 141 bits (341), Expect = 4e-34
Identities = 64/81 (79%), Positives = 72/81 (88%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE L +V +D+EQEM T +SSS+EK+YELPDGQVITIG ERFRCPE LFQPSF+GME
Sbjct: 213 DIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGME 272
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
A GIHETTYNSIMKCDVDIR+
Sbjct: 273 AAGIHETTYNSIMKCDVDIRK 293
Score = 122 bits (293), Expect = 3e-28
Identities = 57/69 (82%), Positives = 63/69 (91%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
KDLY N VLSGGTTM+ GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLS
Sbjct: 293 KDLYGNIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 352
Query: 435 TFQQMWISK 461
TFQQ+ I +
Sbjct: 353 TFQQVKIDQ 361
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 127 bits (307), Expect = 6e-30
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 434
+D+Y N +++GGTTM GI +RM KE+ AL PS+MK+K++ PPE + SVWIGGSILASLS
Sbjct: 282 RDMYGNILMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLS 341
Query: 435 TFQQMWISKQEYDESGPSIVHRKC 506
TF QMWI+K EY+E G +IVHRKC
Sbjct: 342 TFHQMWITKDEYEEHGAAIVHRKC 365
Score = 111 bits (266), Expect = 5e-25
Identities = 51/81 (62%), Positives = 59/81 (72%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
DIKE LCYV LD+EQEM +++K+Y LPDGQ ITI ERF CPE LFQPS +G E
Sbjct: 202 DIKEKLCYVALDYEQEMEKTTKGWTIDKTYVLPDGQEITIEAERFMCPEVLFQPSVIGKE 261
Query: 196 ACGIHETTYNSIMKCDVDIRR 258
+ GIHE T NSI+KC VD RR
Sbjct: 262 SSGIHEATRNSILKCPVDTRR 282
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 94.3 bits (224), Expect = 7e-20
Identities = 40/87 (45%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILA 425
++LY++ +L+GGT+ + +R++K++ +P + ++K++A ER++SVWIGGSILA
Sbjct: 354 RELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILA 413
Query: 426 SLSTFQQMWISKQEYDESGPSIVHRKC 506
SL +FQQMW SK EY+E G S + RKC
Sbjct: 414 SLGSFQQMWFSKSEYEEHGASYIQRKC 440
Score = 56.0 bits (129), Expect = 2e-08
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Frame = +1
Query: 13 GDIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL-- 186
GDIK+ +C V + + S+ SYELPDGQ + IG +RF+ P+ +F PS +
Sbjct: 264 GDIKDSICRVP---DTPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIVQT 320
Query: 187 --GME--------ACGIHETTYNSIMKCDVDIRR 258
GME G+ SI KCDVDIRR
Sbjct: 321 IPGMEKYAEMIPSVRGLPHMVMESINKCDVDIRR 354
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 81.0 bits (191), Expect = 7e-16
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGS 416
+ L NTVL GGTT G R QKE L S ++ ++ PPE YS W+GG+
Sbjct: 274 RQLLENTVLCGGTTSMTGFESRFQKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGA 332
Query: 417 ILASLSTFQQMWISKQEYDESGPSIVHRKCF 509
ILA + Q ++K +YDE+GPS+VHRKCF
Sbjct: 333 ILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +1
Query: 55 EQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 213
E E+A + + + + LPDGQVI+IG ER+ EALFQPS LG+E GI E
Sbjct: 207 EDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEEHGIVE 259
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 77.4 bits (182), Expect = 8e-15
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +1
Query: 16 DIKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 195
+IKE LCY+ D+++E ++ L K+Y LPDG+VI +G ERF+ PEALF P + +E
Sbjct: 212 EIKEKLCYISYDYKRESQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVE 271
Query: 196 ACGIHETTYNSIMKCDVDIR 255
G+ + + I + D+D R
Sbjct: 272 GDGMADMVFRCIQEMDIDNR 291
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 12/92 (13%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEI------TALAPS-----TMKIKIIAPPERKYSVWI 407
LY + VLSGG+TMYPG+ R++KEI T L + ++++I PP RK+ V++
Sbjct: 294 LYQHIVLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYL 353
Query: 408 GGSILAS-LSTFQQMWISKQEYDESGPSIVHR 500
GG++LA + + WI++++Y E G + +++
Sbjct: 354 GGAVLAGIMKDAPEFWINREDYMEEGINCLNK 385
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 440
LY + +L+GG+T++P + +R++ E+ L P +KI + VW GGS+LAS F
Sbjct: 338 LYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDF 397
Query: 441 QQMWISKQEYDESGPSIVHRKCF 509
+ M ++K EY+E G + R+ F
Sbjct: 398 ESMCVTKAEYEELGSARCRRRFF 420
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 127 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 240
I + NERF PE LFQP+ LGM G+ E +I C
Sbjct: 293 IDLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSC 330
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTM----------------KIKIIAPPERK 392
LY N VLSGG+TM+ R+Q+++ + + + ++ +++ P ++
Sbjct: 324 LYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQR 383
Query: 393 YSVWIGGSILASLSTFQQMWISKQEYDESGPSI 491
++VW GGS+L+S F +K+EY+E G SI
Sbjct: 384 FAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +1
Query: 19 IKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 198
+KE LCYV LD++ E+ S + S E+ T+ ERF+ E LFQP GM A
Sbjct: 312 LKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGMRA 366
Query: 199 CGIHETTYNSIMKCD 243
+H+ + CD
Sbjct: 367 MSLHQAVSLCMDHCD 381
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/72 (29%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +3
Query: 264 YANTVLSGGTTMYPGIADRMQKEITALAPSTMK--IKIIAPPERKYSVWIGGSILASLST 437
+ VL+GG+ PG+++R+++E+ PS++ I++I PP + W G ++++LS
Sbjct: 392 FKTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSI 451
Query: 438 FQQMW-ISKQEY 470
F W I+++++
Sbjct: 452 FPGPWCITRKQF 463
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 127 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVD 249
I IG ERFRCPE LF P+ +G++ G+ E SI + D
Sbjct: 589 IVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRLPHD 629
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +3
Query: 261 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 440
L ++ +++GG ++ PG+ +R++ I + P I ++ + W G S A+ F
Sbjct: 637 LTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNF 696
Query: 441 QQMWISKQEYDESG 482
+K +YDE G
Sbjct: 697 LGNAFTKMDYDEKG 710
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 19 IKEXLCYVFLDFEQEMATXASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 192
+KE LCYV LD++ E+ S + S E+ T+ ERF+ E LFQP G+
Sbjct: 312 LKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGI 364
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 34.3 bits (75), Expect = 0.074
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII----APPERKYSVWIGGSIL 422
+ L+++ L GG + G+ +++ + P T I + + E ++ W GG+IL
Sbjct: 480 RKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAIL 539
Query: 423 ASLSTFQQMWISKQEYDESG 482
L ++ WI + ++ +G
Sbjct: 540 GILDFGREAWIERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 34.3 bits (75), Expect = 0.074
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 255 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII----APPERKYSVWIGGSIL 422
+ L+++ L GG + G+ +++ + P T I + + E ++ W GG+IL
Sbjct: 492 RKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAIL 551
Query: 423 ASLSTFQQMWISKQEYDESG 482
L ++ WI + ++ +G
Sbjct: 552 GILDFGREAWIERHQWMVNG 571
>At3g14720.1 68416.m01861 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK19) identical to mitogen-activated
protein kinase (MAPK)(AtMPK19), PMID:12119167;
Length = 586
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 225 LHHEVRRGHPKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 398
++ E+ HP+ L G + +YP ++K+ L ++ K + PP+RK++
Sbjct: 340 IYREILEYHPQLLKDYMNSEGSSFLYPSAIGHLRKQFAYLEENSGKSGPVIPPDRKHA 397
>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1173
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 413 STDPYGVLPLWRSNDLYLHCRW-GESCDFLLHTVGDS 306
S DP GVL W HC W G +CD H V S
Sbjct: 42 SNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVS 78
>At4g00750.1 68417.m00102 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 365 KDHCSSREEVLRMDRWIDPRLPLYLPTNVDLETRVRRV 478
KD C + +L MDR + P+ + + ++D+ T+V+++
Sbjct: 554 KDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKI 591
>At2g39440.1 68415.m04841 expressed protein
Length = 773
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 458 RDP-HLLEGREGGEDRSTDPYGVLPLWRSNDLYLHCRWGESCD 333
R+P G E GEDR DP + + R NDL + + + D
Sbjct: 39 REPGEFAAGMEEGEDRPIDPISDIDITRINDLMFNSNFRAAAD 81
>At1g69270.1 68414.m07941 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 540
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 407 DPYGVLPLWRSNDLYLHCRW-GESCD 333
DP GVL W S+ HC W G SC+
Sbjct: 45 DPNGVLSSWVSDSSSNHCSWYGVSCN 70
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 62 RWPPXHPAAPSRSLTNFPTVRSSPSETK 145
R PP P + SR+ FPTVRS S +
Sbjct: 352 RPPPPSPVSNSRARRGFPTVRSGSSSPR 379
>At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 453
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 83 AAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRQHI 223
+A S + +F TV P E ++AQ L S+ +VW L H+
Sbjct: 269 SAASVAYISFGTVMEPPPEELVAIAQGLESSKVPFVWSLKEKNMVHL 315
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 397 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSALNAP 519
PYGS SSP ++P G+ ++S + P Y S+ AP
Sbjct: 36 PYGSSTTSSPYAVP---YGASKPQSSSSSAPTYGSSSYGAP 73
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 65 WPPXHPAAPSRSLTNFPTVRSSPSET 142
WPP H A+ SR N P S PS T
Sbjct: 129 WPPAHKASYSRPDINKPLPTSQPSWT 154
>At2g42760.1 68415.m05295 expressed protein
Length = 267
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 329 GNHSSRPIDNEDKDHCSSREEVLRMDRWIDPRLPL-YLPTNVDLETRVRRVW 481
GN ++RP +E DHC R+ ++ I R+P + VDL+ + R+W
Sbjct: 207 GNRAARPYLSEAWDHCGGRKGKKQITPEIKWRVPAPAAASEVDLKDNL-RLW 257
>At1g67710.1 68414.m07727 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver
domain; contains similarity to response regulator
proteins from [Arabidopsis thaliana]
Length = 521
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 234 EVRRGHPKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 413
EV G+ ++ V SGG ++ + K + + + S + +I PP+ K IG
Sbjct: 276 EVNSGYQSPGRSSYVFSGGNSLIQKATEIDPKPLASASLSDLNTDVIMPPKTK-KTRIGF 334
Query: 414 SILASLSTFQQM--WISKQEYDESGP 485
S S F + W E ES P
Sbjct: 335 DPPISSSAFDSLLPWNDVPEVLESKP 360
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 68 PPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTR-QHITPS*SAT 244
PP ++P S ++ PT RSSP+ + S SS ++ A+S R +PS S +
Sbjct: 170 PPVSHSSPPVSHSSPPTSRSSPAVSHSSPVVAASSPVKAVSSSTASSPRAASPSPSPSPS 229
Query: 245 WTSEGLV 265
+S G++
Sbjct: 230 ISSSGIL 236
>At4g19110.1 68417.m02819 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 461
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +2
Query: 56 SRRWPPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRL--SSNPRSWVWKLAASTRQHITP 229
S+ PP + P+ SL RSS SET D +A ++ R + +Q P
Sbjct: 371 SKYRPPGKKSPPAASLNKNRVTRSSVSETADKLANMTIGATGSRRHSVSVVGQHQQLKPP 430
Query: 230 S*SATWTSE 256
A W E
Sbjct: 431 PMKAGWVGE 439
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 412 DRSSPPSLPS-NKCGSRNKSTTSLAPPLYTGSALNA 516
D +S PS +K GSR++S + P L+TG LN+
Sbjct: 1247 DDASLEEWPSTSKAGSRSRSASVSKPSLHTGIRLNS 1282
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 146 DSVAQRLSSNPRSWVWKLAASTRQHITPS*SATWTSEGLVRQHRIVRWYHHVPWNRRPYA 325
D+ + ++ PR V L+ S R H TP S TWT+ R H W + P
Sbjct: 12 DASRHQQTTRPRGRVEDLSTS-RHHSTPWSSTTWTT---TRSHYSTPWSSIITSTTSPSL 67
Query: 326 KGNHSSRP 349
+H+++P
Sbjct: 68 --DHTTQP 73
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +2
Query: 32 CATFFLTSSRRWPPXHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 178
C T T+S PP P P S T+ T S S A+ SS P
Sbjct: 113 CKTSAGTNSSSTPPATPKTPPASSTSTGTGSGSTGNAAPSTAKPTSSAP 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,394
Number of Sequences: 28952
Number of extensions: 334558
Number of successful extensions: 1171
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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