Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0131
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062...    30   1.4  
05_01_0407 + 3208818-3210218                                           28   5.5  

>12_02_1013 +
           25305531-25305611,25305793-25305861,25306115-25306208,
           25306292-25306396,25306577-25306660,25306793-25306866,
           25307936-25308001,25308892-25308948,25309433-25309477,
           25309602-25309655,25310097-25310237
          Length = 289

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 128 PLEVTRIDVFPVASVKTTAYTRAPIFLPQSGHALQLQXRLLFIPDNDLYAFT 283
           PL++   DV P+ SV+ + +T  P F  Q  +  QL   +  + +NDL  +T
Sbjct: 61  PLQLLGFDVDPINSVQFSNHTGYPTFRGQVLNGSQLWDLIEGLAENDLLHYT 112


>05_01_0407 + 3208818-3210218
          Length = 466

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 222 WPLCGKNIGARVYAVVFTEATGKTSILVTSRGYSRFTELVGELTGP 85
           +PL G+ + A     +  E TG+ ++ V +       EL GE+TGP
Sbjct: 75  YPLAGRIVEASPGRKLLVECTGEGAVFVAAESGVAMDEL-GEVTGP 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,015
Number of Sequences: 37544
Number of extensions: 204896
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)