Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0131
         (645 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2651|AAN11763.1|  527|Drosophila melanogaster CG32152-P...    32   0.58 
AY119587-1|AAM50241.1| 1235|Drosophila melanogaster LD15137p pro...    29   7.1  
AY060966-1|AAL28514.1|  504|Drosophila melanogaster GM09639p pro...    29   7.1  
AE014298-1784|AAN09312.1| 1052|Drosophila melanogaster CG1848-PD...    29   7.1  
AE014298-1783|AAN09311.1| 1257|Drosophila melanogaster CG1848-PC...    29   7.1  
AE014298-1782|AAF48176.2| 1235|Drosophila melanogaster CG1848-PA...    29   7.1  
AB042818-1|BAB17234.1| 1257|Drosophila melanogaster LIM-kinase1 ...    29   7.1  
AB042816-1|BAB17233.1| 1235|Drosophila melanogaster LIM-kinase1 ...    29   7.1  

>AE014296-2651|AAN11763.1|  527|Drosophila melanogaster CG32152-PA
           protein.
          Length = 527

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 243 LXCNCNAWPLCGKNIGA-RVYAVVFTEATGKTSILVTSRGY 124
           L C      L    +GA RVYAV +++ TG T+++V   GY
Sbjct: 219 LCCGTGTLALMAAQMGAKRVYAVDYSKVTGYTTLVVRQNGY 259


>AY119587-1|AAM50241.1| 1235|Drosophila melanogaster LD15137p protein.
          Length = 1235

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540  VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
            +PA  CVS   + +PG+ T+++ QR T
Sbjct: 1097 IPASNCVSPTRSSRPGSPTKHLAQRHT 1123


>AY060966-1|AAL28514.1|  504|Drosophila melanogaster GM09639p
           protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540 VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
           +PA  CVS   + +PG+ T+++ QR T
Sbjct: 366 IPASNCVSPTRSSRPGSPTKHLAQRHT 392


>AE014298-1784|AAN09312.1| 1052|Drosophila melanogaster CG1848-PD,
           isoform D protein.
          Length = 1052

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540 VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
           +PA  CVS   + +PG+ T+++ QR T
Sbjct: 914 IPASNCVSPTRSSRPGSPTKHLAQRHT 940


>AE014298-1783|AAN09311.1| 1257|Drosophila melanogaster CG1848-PC,
            isoform C protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540  VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
            +PA  CVS   + +PG+ T+++ QR T
Sbjct: 1119 IPASNCVSPTRSSRPGSPTKHLAQRHT 1145


>AE014298-1782|AAF48176.2| 1235|Drosophila melanogaster CG1848-PA,
            isoform A protein.
          Length = 1235

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540  VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
            +PA  CVS   + +PG+ T+++ QR T
Sbjct: 1097 IPASNCVSPTRSSRPGSPTKHLAQRHT 1123


>AB042818-1|BAB17234.1| 1257|Drosophila melanogaster LIM-kinase1
            protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540  VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
            +PA  CVS   + +PG+ T+++ QR T
Sbjct: 1119 IPASNCVSPTRSSRPGSPTKHLAQRHT 1145


>AB042816-1|BAB17233.1| 1235|Drosophila melanogaster LIM-kinase1
            protein.
          Length = 1235

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 540  VPAVVCVSEKEAKQPGTVTRYVMQRXT 620
            +PA  CVS   + +PG+ T+++ QR T
Sbjct: 1097 IPASNCVSPTRSSRPGSPTKHLAQRHT 1123


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,230,780
Number of Sequences: 53049
Number of extensions: 361118
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)