Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=...    35   1.6  
UniRef50_Q2HHQ1 Cluster: Putative uncharacterized protein; n=4; ...    33   6.3  
UniRef50_UPI0000DC09F8 Cluster: UPI0000DC09F8 related cluster; n...    33   8.4  

>UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=2;
           Culicidae|Rep: Mixed-lineage leukemia protein, mll -
           Aedes aegypti (Yellowfever mosquito)
          Length = 2874

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 517 N*ITYVHFRAETSGTQSLANVRRQPQQTPPXIYQETIKDSPPSSPGNRT 663
           N I  ++  A  SGTQ +A  + +P   P  +YQ  ++ +PP+ P N T
Sbjct: 53  NLINPLNKAAGPSGTQPIAQPQMEPTHKPIQMYQANLQPAPPAPPENIT 101


>UniRef50_Q2HHQ1 Cluster: Putative uncharacterized protein; n=4;
            Chaetomium globosum|Rep: Putative uncharacterized protein
            - Chaetomium globosum (Soil fungus)
          Length = 1521

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 476  CNVVAQVVIKNKRKIKLHTYISEQKLRVHNHWLMYAVNRSRPRLRYT 616
            C+ +  + + N+  + L T +  + + +HNHW+   VN  R R+ YT
Sbjct: 1426 CDNIQTIRLVNRDTVTLQTKL--RHVDIHNHWIRQEVNNGRIRVVYT 1470


>UniRef50_UPI0000DC09F8 Cluster: UPI0000DC09F8 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC09F8 UniRef100 entry -
           Rattus norvegicus
          Length = 1095

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 116 QYGPGSHMPDAAGYQEQETSSDGVCRQHGAGSYASWS 226
           ++G GSH P ++G+    +S      +HG+GS+ S S
Sbjct: 54  KHGSGSHQPSSSGHHGSSSSQSSGFGKHGSGSHQSSS 90



 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 116 QYGPGSHMPDAAGYQEQETSSDGVCRQHGAGSYASWS 226
           ++G GSH P ++G+    +S      +HG+GS+ S S
Sbjct: 243 KHGSGSHQPSSSGHHGSSSSQSSGFGKHGSGSHQSSS 279


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,592,062
Number of Sequences: 1657284
Number of extensions: 11786659
Number of successful extensions: 28982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28973
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)