Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   7.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.2  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 611 YTRKLSKIHLQARQVIV 661
           YT++ SKIHL  R V V
Sbjct: 483 YTKQQSKIHLIVRSVFV 499


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 563 NHWLMYAVNRSRPRL 607
           N W+  A NR  PRL
Sbjct: 315 NPWIYLAFNRELPRL 329


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 586 QPQQTPPXIYQETIKDSPPSSPGNRTTR 669
           QP   P  +Y     D P S    RT R
Sbjct: 186 QPMLWPAWVYCTRYSDRPSSGRSPRTRR 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,425
Number of Sequences: 336
Number of extensions: 3119
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)