Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   1.9  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   2.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   4.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.7  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   10.0 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   10.0 

>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 64  YFIMLPTVSVGWPVLAKTIWARF-PYARCRRL 156
           YF +   +S+GWP LAKT   +F P A+  R+
Sbjct: 7   YFRIEGMISLGWPRLAKTSILKFVPIAQNHRI 38


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 516 KLNYIRTFPSRNFGYTIIG*CTPSTAADPAXDIPG 620
           +  Y+R FPS     T  G  TP + + P   I G
Sbjct: 473 RYGYVRIFPSTTLSSTASGYYTPDSLSTPEPSIDG 507


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 119  YGPGSHMPDAAGYQEQETSSDGVCRQHGA 205
            Y PGS MP A  Y +Q T S  +    G+
Sbjct: 1068 YTPGSDMPSAKLYDQQLTLSPSLMTNQGS 1096


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 86   TVGNIIKYKGWGSHKIYLKQY 24
            T+G IIK+  W  ++  LK+Y
Sbjct: 1518 TIGEIIKWAHWNQYQAILKRY 1538


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 169 FLFLIAGGIGHMGTGPILSLLVL 101
           ++ LIAGG+G   T PIL  L+L
Sbjct: 416 YVLLIAGGVGFSYTLPILRDLIL 438


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 300 GSYTGIERVEYSLGTSTNIIKPIISLINNXFCYITRKCVS 419
           G +   +RVE  LG S  +   I  LIN     +  KC S
Sbjct: 31  GPWNNAQRVEKVLGKSLRVTALINPLINESERVLKSKCAS 70


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 72  YVADSVSGMASTSKDNMGPVPICPMPPAIRNKKR 173
           +V D+++G+ +   +NM  VPI  MP  ++ +K+
Sbjct: 297 HVLDALNGVLNVYTNNMILVPIKEMPDLLKVQKQ 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,335
Number of Sequences: 5004
Number of extensions: 47978
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)