Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357...    28   5.9  

>10_01_0326 +
           3574129-3574329,3575144-3575692,3575914-3576072,
           3576349-3577543,3577626-3577762,3578052-3578242,
           3578888-3579218
          Length = 920

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 518 IKLHTYISEQKLRVHNHWLMYAVNRSRPRL 607
           ++L  +I   + R+++HW +YA+N    R+
Sbjct: 796 VQLRDFIINNQDRINSHWSLYAINIPHKRI 825


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,255
Number of Sequences: 37544
Number of extensions: 335641
Number of successful extensions: 786
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)